C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001NH_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000184428-ENSG00000158106 CGP 9606 8:143304384-143384220
GeneTranscriptPositionBiotype
ENSG00000158106 (RHPN1)
rhophilin, Rho GTPase binding protein 1 		ENST00000289013 (RHPN1-001) 143368887-143384220 protein_coding
ENST00000522335 (RHPN1-002) 143368988-143384218 retained_intron
ENST00000522899 (RHPN1-003) 143379337-143382779 retained_intron
ENST00000620174 (RHPN1-201) 143368855-143384219 protein_coding
ENSG00000184428 (TOP1MT)
topoisomerase (DNA) I, mitochondrial 		ENST00000329245 (TOP1MT-001) 143309324-143334896 protein_coding
ENST00000505857 (TOP1MT-004) 143343199-143359979 processed_transcript
ENST00000517857 (TOP1MT-012) 143309356-143310503 retained_intron
ENST00000518007 (TOP1MT-021) 143325522-143344984 protein_coding
ENST00000518760 (TOP1MT-020) 143326290-143356046 protein_coding
ENST00000518951 (TOP1MT-007) 143316000-143334863 nonsense_mediated_decay
ENST00000519139 (TOP1MT-006) 143316092-143334056 protein_coding
ENST00000519148 (TOP1MT-002) 143309360-143359977 protein_coding
ENST00000519591 (TOP1MT-016) 143324060-143334854 protein_coding
ENST00000519977 (TOP1MT-013) 143304384-143315807 protein_coding
ENST00000520950 (TOP1MT-011) 143326312-143359960 protein_coding
ENST00000521024 (TOP1MT-010) 143344737-143358666 processed_transcript
ENST00000521193 (TOP1MT-003) 143309356-143359924 protein_coding
ENST00000522041 (TOP1MT-017) 143324000-143331811 protein_coding
ENST00000522043 (TOP1MT-015) 143329387-143334866 protein_coding
ENST00000522121 (TOP1MT-018) 143325355-143329433 nonsense_mediated_decay
ENST00000523417 (TOP1MT-019) 143325425-143334844 nonsense_mediated_decay
ENST00000523676 (TOP1MT-005) 143309377-143334795 protein_coding
ENST00000524092 (TOP1MT-014) 143332503-143334821 processed_transcript
ENSG00000254389 (RHPN1-AS1)
RHPN1 antisense RNA 1 (head to head) 		ENST00000518049 (RHPN1-AS1-001) 143366631-143368548 antisense
ENSG00000263660 (AC087793.1)
 ENST00000585120 (AC087793.1-201) 143314921-143315006 miRNA
CIL_0001NH_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000000934-ENSMUSG00000022580 CGP 10090 15:75657035-75714410
GeneTranscriptPositionBiotype
ENSMUSG00000000934 (Top1mt)
DNA topoisomerase 1, mitochondrial 		ENSMUST00000000958 (Top1mt-001) 75657035-75678800 protein_coding
ENSMUSG00000022580 (Rhpn1)
rhophilin, Rho GTPase binding protein 1 		ENSMUST00000023244 (Rhpn1-002) 75704394-75714225 protein_coding
ENSMUST00000121137 (Rhpn1-001) 75704280-75714408 protein_coding
ENSMUST00000124749 (Rhpn1-003) 75704308-75714410 retained_intron
ENSMUST00000143056 (Rhpn1-004) 75704318-75714405 retained_intron
ENSMUST00000149407 (Rhpn1-005) 75704329-75714408 nonsense_mediated_decay

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001NH_0001ENSG00000158106ENST00000289013ENST00000522335ENST00000522899ENST00000620174ENSG00000184428ENST00000329245ENST00000505857ENST00000517857ENST00000518007ENST00000518760ENST00000518951ENST00000519139ENST00000519148ENST00000519591ENST00000519977ENST00000520950ENST00000521024ENST00000521193ENST00000522041ENST00000522043ENST00000522121ENST00000523417ENST00000523676ENST00000524092ENSG00000254389ENST00000518049ENSG00000263660ENST00000585120CIL_0001NH_0002ENSMUSG00000000934ENSMUST00000000958ENSMUSG00000022580ENSMUST00000023244ENSMUST00000121137ENSMUST00000124749ENSMUST00000143056ENSMUST00000149407
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001NH_0001ENSG00000158106ENST00000289013ENST00000522335ENST00000522899ENST00000620174ENSG00000184428ENST00000329245ENST00000505857ENST00000517857ENST00000518007ENST00000518951ENST00000519148ENST00000519591ENST00000519977ENST00000521193ENST00000522041ENST00000522043ENST00000523417ENST00000523676ENSG00000254389ENST00000518049ENSG00000263660ENST00000585120CIL_0001NH_0002ENSMUSG00000000934ENSMUST00000000958ENSMUSG00000022580ENSMUST00000023244ENSMUST00000121137ENSMUST00000124749ENSMUST00000143056ENSMUST00000149407
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000158106 ENST00000289013 0.496±0.00 0.578±0.00 0.287±0.00 N/A N/A 0.320±0.00 N/A 1.593±0.00 0.202±0.13 N/A 0.037±0.00 1.088±0.81 0.671±0.02 0.349±0.00
ENST00000522335 N/A N/A N/A 1.097±0.00 0.179±0.00 N/A 0.122±0.00 0.369±0.25 N/A N/A N/A 5.901±0.00 0.498±0.00 1.810±0.54
ENST00000522899 0.857±0.00 2.260±0.00 N/A 3.505±0.00 1.532±0.00 0.875±0.00 N/A 2.990±0.00 0.403±0.00 4.981±0.00 0.165±0.00 3.719±1.37 0.420±0.10 1.335±0.00
ENST00000620174 N/A 1.067±0.00 N/A 0.950±0.00 N/A N/A N/A 1.103±0.00 N/A 1.151±0.70 N/A N/A N/A N/A
ENSG00000184428 ENST00000329245 N/A 6.604±0.00 0.527±0.00 N/A N/A 2.300±0.98 0.222±0.16 0.622±0.25 1.692±0.00 2.980±0.00 1.871±0.00 22.191±13.05 7.663±1.41 N/A
ENST00000505857 N/A N/A N/A N/A N/A N/A 0.080±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000517857 N/A N/A N/A N/A 1.106±0.00 N/A N/A N/A N/A 0.822±0.00 N/A N/A N/A N/A
ENST00000518007 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.007±0.00 N/A N/A N/A
ENST00000518760 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518951 3.765±0.00 N/A N/A N/A N/A N/A 0.054±0.00 1.400±0.00 N/A N/A N/A 15.056±0.00 N/A 12.612±0.00
ENST00000519139 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519148 10.832±0.00 8.960±0.00 0.221±0.00 2.131±0.00 9.563±0.00 8.923±0.00 0.630±0.00 2.134±1.89 6.571±0.00 2.545±0.00 0.894±0.00 19.304±0.00 N/A 22.275±0.00
ENST00000519591 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.700±0.00 N/A N/A N/A N/A
ENST00000519977 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.588±0.00 N/A N/A N/A
ENST00000520950 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521024 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521193 N/A N/A N/A 0.745±0.00 N/A N/A N/A N/A N/A 0.331±0.00 N/A N/A N/A 18.759±6.42
ENST00000522041 N/A N/A N/A N/A 0.714±0.00 N/A 0.292±0.00 N/A N/A 0.506±0.00 N/A N/A N/A N/A
ENST00000522043 N/A N/A 0.820±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522121 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523417 N/A N/A N/A N/A N/A N/A N/A N/A 1.270±0.00 N/A N/A N/A N/A N/A
ENST00000523676 N/A N/A N/A 2.246±0.00 N/A N/A 0.388±0.00 N/A N/A 1.708±0.00 1.556±0.00 N/A N/A N/A
ENST00000524092 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000254389 ENST00000518049 0.224±0.00 0.177±0.00 N/A 0.314±0.00 0.214±0.00 0.150±0.00 0.155±0.00 0.491±0.00 0.117±0.00 0.082±0.06 0.189±0.00 0.419±0.23 0.140±0.08 0.427±0.05
ENSG00000263660 ENST00000585120 N/A N/A N/A N/A N/A N/A N/A 0.361±0.00 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000000934 ENSMUST00000000958 4.058±0.97 3.152±1.71 8.475±0.33 7.671±4.40 1.331±0.49 1.361±0.53 1.407±0.35 8.509±1.33 8.774±2.49 1.834±0.40 5.206±0.99 4.921±3.77 15.258±10.22 5.503±4.51
ENSMUSG00000022580 ENSMUST00000023244 N/A 0.255±0.01 N/A 2.043±0.00 0.143±0.00 0.110±0.03 0.029±0.00 N/A 0.017±0.00 N/A 0.063±0.02 0.697±0.31 1.349±0.00 2.938±0.00
ENSMUST00000121137 0.383±0.27 0.236±0.08 0.166±0.05 5.641±1.37 0.297±0.08 0.145±0.02 0.059±0.00 11.018±1.85 0.089±0.08 1.000±0.22 0.056±0.00 2.320±0.90 1.168±0.40 11.113±1.84
ENSMUST00000124749 0.098±0.06 0.141±0.07 0.183±0.00 3.849±1.03 0.157±0.11 0.045±0.02 0.044±0.00 2.806±1.12 0.029±0.01 0.288±0.06 N/A 0.683±0.19 0.411±0.12 1.517±0.00
ENSMUST00000143056 0.054±0.00 N/A N/A N/A 0.065±0.01 0.046±0.01 0.026±0.00 1.574±0.00 0.021±0.01 N/A 0.063±0.03 0.551±0.17 0.451±0.06 0.599±0.00
ENSMUST00000149407 0.061±0.00 0.146±0.02 N/A N/A 0.084±0.00 0.135±0.00 0.062±0.03 1.604±0.11 0.022±0.00 N/A N/A 0.368±0.17 N/A N/A

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