C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tetraspanin 17
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000298564 TSPAN17-009 ENSG00000048140 9606 + 5:176647467-176659054 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonLungOvaryPlacentaTestisENST00000298564
Transcript ID Adipose Brain Colon Lung Ovary Placenta Testis
ENST00000298564 1.002±0.00 1.496±0.00 2.479±0.00 2.917±0.00 3.557±0.00 1.186±0.33 2.578±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098R CIL_00098R_0001 VISTA 5:176349731-176951529
CIL_0002NB CIL_0002NB_0001 CGP 5:176630682-176659054
CIL_0002NA CIL_0002NA_0001 CGP 5:176647387-176880895

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000151 NAS ubiquitin ligase complex
GO:0004842 NAS ubiquitin-protein transferase activity
GO:0016021 IEA integral component of membrane
GO:0016567 NAS protein ubiquitination
GO:0019899 IPI enzyme binding
GO:0072594 IDA establishment of protein localization to organelle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000163915 Tspan17-006 protein_coding Mus_musculus 0 573
ENSMUST00000163796 Tspan17-007 protein_coding Mus_musculus 0 475
ENSMUST00000131692 Tspan17-002 protein_coding Mus_musculus 0 272
ENSMUST00000026993 Tspan17-001 protein_coding Mus_musculus 0 272
ENSDART00000101132 TSPAN17-201 protein_coding Danio_rerio 1e-36 159
ENSMUST00000099503 Tspan17-009 protein_coding Mus_musculus 6e-34 150
ENSDART00000075178 tspan5a-201 protein_coding Danio_rerio 1e-20 106
ENSDART00000126739 tspan5a-202 protein_coding Danio_rerio 1e-20 106
ENSMUST00000139574 Tspan17-004 retained_intron Mus_musculus 3e-17 95
ENSMUST00000145574 Tspan17-003 protein_coding Mus_musculus 3e-17 95
ENSMUST00000171859 Tspan17-008 protein_coding Mus_musculus 0.000000002 69

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