C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: keratin 84
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000023720 Krt84-201 ENSMUSG00000044294 10090 - 15:101525026-101532820 protein_coding

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonLiverLungOvaryPlacentaENSMUST00000023720
Transcript ID Adipose Bladder Brain Breast Colon Liver Lung Ovary Placenta
ENSMUST00000023720 0.026±0.00 0.003±0.00 0.006±0.00 0.023±0.01 0.554±0.17 0.005±0.00 0.059±0.02 0.733±0.44 0.007±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00033Q CIL_00033Q_0015 CGP 15:101485131-101532820
CIL_00033Q CIL_00033Q_000S CGP 15:101525026-101550659

Gene Ontology

GO IDEvidence TypeGO Description
GO:0030280 IDA structural constituent of epidermis
GO:0045095 IEA keratin filament
GO:0045111 IDA intermediate filament cytoskeleton
GO:0045616 IDA regulation of keratinocyte differentiation
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000064977 si:ch211-243g18.2-201 protein_coding Danio_rerio 0.000000002 69
ENSDART00000136281 si:ch211-243g18.2-002 protein_coding Danio_rerio 0.000000002 69
ENSDART00000028855 si:ch211-243g18.2-001 protein_coding Danio_rerio 0.000000002 69
ENST00000253408 GFAP-001 protein_coding Homo_sapiens 9e-23 113
ENST00000257901 KRT85-001 protein_coding Homo_sapiens 0 516
ENST00000257951 KRT84-001 protein_coding Homo_sapiens 0 1511
ENST00000293308 KRT8-002 protein_coding Homo_sapiens 0 309
ENST00000309680 KRT2-001 protein_coding Homo_sapiens 7e-18 97
ENST00000313234 KRT80-001 protein_coding Homo_sapiens 0 204
ENST00000394815 KRT80-002 protein_coding Homo_sapiens 0 204
ENST00000396270 KRT8P39-001 processed_pseudogene Homo_sapiens 5e-27 126
ENST00000406052 KRT8P43-001 processed_pseudogene Homo_sapiens 1e-33 148
ENST00000409686 KRT8P11-001 processed_pseudogene Homo_sapiens 0 226
ENST00000435360 GFAP-002 protein_coding Homo_sapiens 5e-23 113
ENST00000463294 KRT8P13-001 processed_pseudogene Homo_sapiens 8e-29 132
ENST00000466011 KRT80-003 retained_intron Homo_sapiens 0 204
ENST00000468527 KRT8P12-002 processed_transcript Homo_sapiens 8e-19 99
ENST00000472924 KRT8P12-001 transcribed_processed_pseudogene Homo_sapiens 1e-28 132
ENST00000473150 KRT8P25-001 processed_pseudogene Homo_sapiens 2e-32 145
ENST00000489121 KRT8P36-001 processed_pseudogene Homo_sapiens 1e-28 132
ENST00000508125 KRT8P33-001 processed_pseudogene Homo_sapiens 0 226
ENST00000512037 KRT8P46-001 processed_pseudogene Homo_sapiens 2e-40 171
ENST00000512863 KRT8P32-001 processed_pseudogene Homo_sapiens 5e-32 143
ENST00000519669 KRT8P3-001 processed_pseudogene Homo_sapiens 0 278
ENST00000533003 KRT8P7-001 processed_pseudogene Homo_sapiens 1e-33 148
ENST00000544265 KRT85-002 protein_coding Homo_sapiens 0 377
ENST00000546542 KRT8-015 protein_coding Homo_sapiens 0.00000000004 73
ENST00000546583 KRT8-005 retained_intron Homo_sapiens 5e-35 154
ENST00000546826 KRT8-013 protein_coding Homo_sapiens 2e-35 154
ENST00000546897 KRT8-003 protein_coding Homo_sapiens 0 309
ENST00000547413 KRT8-016 protein_coding Homo_sapiens 1e-35 154
ENST00000548998 KRT8-014 protein_coding Homo_sapiens 2e-35 154
ENST00000550170 KRT8-008 retained_intron Homo_sapiens 4e-35 154
ENST00000552150 KRT8-004 protein_coding Homo_sapiens 0 309
ENST00000552551 KRT8-001 protein_coding Homo_sapiens 0 309
ENST00000585543 GFAP-014 retained_intron Homo_sapiens 2e-23 113
ENST00000586793 GFAP-024 protein_coding Homo_sapiens 4e-23 113
ENST00000587997 GFAP-011 protein_coding Homo_sapiens 0.000000000008 75
ENST00000588640 GFAP-012 processed_transcript Homo_sapiens 2e-23 113
ENST00000592320 GFAP-005 protein_coding Homo_sapiens 1e-21 108

Loading