C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox D8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000313173 HOXD8-001 ENSG00000175879 9606 + 2:176129740-176132029 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonHeartKidneyLungMuscleOvaryPlacentaENST00000313173
Transcript ID Breast Colon Heart Kidney Lung Muscle Ovary Placenta
ENST00000313173 1.521±0.00 3.832±0.00 0.350±0.00 25.438±0.00 0.455±0.00 0.528±0.00 3.731±1.26 0.120±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007L2 CIL_0007L2_0001 UCNEbase 2:175103181-177219808
CIL_00090A CIL_00090A_0001 VISTA 2:175589301-176190657
CIL_0008JZ CIL_0008JZ_0001 VISTA 2:175775342-176376682
CIL_00017L CIL_00017L_0001 CGP 2:176122720-176132695
CIL_00017M CIL_00017M_0001 CGP 2:176129694-176173102

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 NAS nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0008595 NAS anterior/posterior axis specification, embryo
GO:0009952 IEA anterior/posterior pattern specification
GO:0043565 IEA sequence-specific DNA binding
GO:0048705 IEA skeletal system morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000019749 Hoxd8-001 protein_coding Mus_musculus 0 1626
ENSMUST00000074721 Hoxd8-002 protein_coding Mus_musculus 0 1530
ENSMUST00000151380 Hoxd8-003 protein_coding Mus_musculus 0 608
ENSDART00000046638 hoxb8a-001 protein_coding Danio_rerio 9e-16 90
ENSDART00000082355 hoxd4a-001 protein_coding Danio_rerio 0.000000000007 77

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