C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeo box D4a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000082355 hoxd4a-001 ENSDARG00000059276 7955 - 9:1939264-1941943 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyMuscleENSDART00000082355
Transcript ID Brain Heart Kidney Muscle
ENSDART00000082355 0.623±0.29 0.029±0.00 0.261±0.09 0.115±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007L2 CIL_0007L2_0004 UCNEbase 9:1732069-2355236
CIL_0006SE CIL_0006SE_0001 CGP 9:1927848-1950351

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000019749 Hoxd8-001 protein_coding Mus_musculus 0.00000000001 77
ENSMUST00000047904 Hoxd4-201 protein_coding Mus_musculus 0 231
ENSMUST00000053932 HOXD3-001 nonsense_mediated_decay Mus_musculus 0 231
ENSMUST00000074721 Hoxd8-002 protein_coding Mus_musculus 0.000000000007 77
ENSMUST00000111980 Hoxd4-001 protein_coding Mus_musculus 0 231
ENSMUST00000151380 Hoxd8-003 protein_coding Mus_musculus 0.000000000002 77
ENST00000006015 HOXA11-001 protein_coding Homo_sapiens 0.000003 58
ENST00000306324 HOXD4-001 protein_coding Homo_sapiens 0 237
ENST00000313173 HOXD8-001 protein_coding Homo_sapiens 0.000000000007 77
ENST00000429017 HOXD8-002 protein_coding Homo_sapiens 0.000000000006 77
ENST00000450510 HOXD8-003 protein_coding Homo_sapiens 0.000000000005 77
ENST00000468418 HOXD3-001 nonsense_mediated_decay Homo_sapiens 0 237
ENST00000517402 HOXA11-002 protein_coding Homo_sapiens 0.000003 58
ENST00000544999 HOXD8-004 protein_coding Homo_sapiens 0.000000000005 77

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