C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pre-mRNA processing factor 31
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000321030 PRPF31-001 ENSG00000105618 9606 + 19:54115457-54131709 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaENST00000321030
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta
ENST00000321030 7.768±0.00 2.426±0.00 9.719±4.49 4.901±0.00 4.077±0.00 0.852±0.00 5.650±0.00 6.844±0.00 1.148±0.00 8.919±3.88 16.784±3.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005NN CIL_0005NN_0001 CGP 19:54102728-54115675
CIL_0005O3 CIL_0005O3_0001 CGP 19:54107013-54131719
CIL_0005OD CIL_0005OD_0001 CGP 19:54115410-54155681

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000244 IEA:IDA spliceosomal tri-snRNP complex assembly
GO:0000398 IDA mRNA splicing, via spliceosome
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005684 IC U2-type spliceosomal complex
GO:0005687 IDA U4 snRNP
GO:0005690 TAS U4atac snRNP
GO:0015030 IDA Cajal body
GO:0016607 IDA nuclear speck
GO:0043021 IDA ribonucleoprotein complex binding
GO:0044822 IDA poly(A) RNA binding
GO:0046540 IEA:IDA U4/U6 x U5 tri-snRNP complex
GO:0070990 IPI snRNP binding
GO:0071339 IDA MLL1 complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000008517 Prpf31-001 protein_coding Mus_musculus 0 1919
ENSMUST00000179769 Prpf31-201 protein_coding Mus_musculus 0 1814
ENSMUST00000108636 Prpf31-004 protein_coding Mus_musculus 0 1814
ENSMUST00000125782 Prpf31-003 retained_intron Mus_musculus 0 909
ENSMUST00000143231 Prpf31-002 retained_intron Mus_musculus 0 320

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