C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CUB and Sushi multiple domains 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000335551 CSMD1-006 ENSG00000183117 9606 - 8:2935353-3409607 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartLiverOvaryENST00000335551
Transcript ID Adipose Adrenal Brain Breast Heart Liver Ovary
ENST00000335551 0.025±0.00 0.009±0.00 0.497±0.00 0.073±0.00 0.014±0.00 0.072±0.00 0.020±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000070 CIL_000070_0002 CGP 8:2045040-4994972
CIL_0000LC CIL_0000LC_0001 CGP 8:2935353-6643623

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000082104 Csmd1-001 protein_coding Mus_musculus 0 5262
ENSMUST00000131778 Csmd1-003 processed_transcript Mus_musculus 0 3744
ENSMUST00000125551 Csmd1-002 retained_intron Mus_musculus 0 3155
ENSMUST00000100670 Csmd3-201 protein_coding Mus_musculus 0 388
ENSMUST00000162830 Csmd3-001 protein_coding Mus_musculus 0 388
ENSMUST00000160658 Csmd3-004 protein_coding Mus_musculus 0 388
ENSMUST00000161653 Csmd3-005 protein_coding Mus_musculus 0 296
ENSMUST00000110261 Csmd3-006 retained_intron Mus_musculus 2e-40 174
ENSDART00000006458 protein_coding Danio_rerio 8e-39 169
ENSDART00000148564 protein_coding Danio_rerio 8e-39 169

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