C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CUB and Sushi multiple domains 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000082104 Csmd1-001 ENSMUSG00000060924 10090 - 8:15892537-17535281 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000082104
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000082104 0.206±0.14 0.130±0.03 0.065±0.03 1.188±0.52 0.231±0.07 0.032±0.01 0.020±0.00 0.119±0.06 0.008±0.01 0.035±0.00 0.011±0.00 1.285±0.44 0.005±0.00 0.091±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000070 CIL_000070_0003 CGP 8:15057653-17535586
CIL_0000LC CIL_0000LC_0002 CGP 8:15892537-18803189

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001964 IMP startle response
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0016021 IEA integral component of membrane
GO:0042593 IMP glucose homeostasis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000006458 protein_coding Danio_rerio 0 252
ENSDART00000148564 protein_coding Danio_rerio 0 252
ENSDART00000097148 CSMD1-202 protein_coding Danio_rerio 0 244
ENSDART00000059170 CSMD1-201 protein_coding Danio_rerio 0 244
ENST00000297405 CSMD3-001 protein_coding Homo_sapiens 0 309
ENST00000335551 CSMD1-006 protein_coding Homo_sapiens 0 5262
ENST00000339701 CSMD3-007 protein_coding Homo_sapiens 0 309
ENST00000343508 CSMD3-006 protein_coding Homo_sapiens 0 309
ENST00000400186 CSMD1-004 protein_coding Homo_sapiens 0 7738
ENST00000455883 CSMD3-002 protein_coding Homo_sapiens 0 340
ENST00000520002 CSMD1-001 protein_coding Homo_sapiens 0 10600
ENST00000521646 CSMD1-014 processed_transcript Homo_sapiens 0 254
ENST00000523062 CSMD1-010 retained_intron Homo_sapiens 0 196
ENST00000523387 CSMD1-007 processed_transcript Homo_sapiens 0 2204
ENST00000523488 CSMD1-008 retained_intron Homo_sapiens 0 3639
ENST00000537824 CSMD1-201 protein_coding Homo_sapiens 0 10170
ENST00000602557 CSMD1-017 protein_coding Homo_sapiens 0 10600
ENST00000602723 CSMD1-018 protein_coding Homo_sapiens 0 7738

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