C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CDC42 effector protein (Rho GTPase binding) 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000335793 CDC42EP4-001 ENSG00000179604 9606 - 17:73283624-73312175 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000335793
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000335793 43.545±0.00 16.873±0.00 10.685±8.90 9.265±7.69 13.215±11.31 8.084±6.15 5.778±3.91 2.866±2.00 10.153±8.71 5.262±0.00 35.574±21.37 21.003±0.91 11.923±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007R4 CIL_0007R4_0001 VISTA 17:72990906-73592358
CIL_0008QM CIL_0008QM_0001 VISTA 17:73240460-73843108
CIL_00073C CIL_00073C_0001 CGP 17:73248449-73312175
CIL_0003AC CIL_0003AC_0002 CGP 17:73283624-73644089

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005886 IDA plasma membrane
GO:0007266 IEA Rho protein signal transduction
GO:0008360 IDA regulation of cell shape
GO:0015629 IDA actin cytoskeleton
GO:0015630 IDA microtubule cytoskeleton
GO:0017049 NAS GTP-Rho binding
GO:0031274 IDA positive regulation of pseudopodium assembly
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000053536 Cdc42ep4-001 protein_coding Mus_musculus 0 959
ENSMUST00000106616 Cdc42ep4-002 protein_coding Mus_musculus 0 909
ENSMUST00000131488 Cdc42ep4-004 protein_coding Mus_musculus 0 601
ENSMUST00000153453 Cdc42ep4-003 protein_coding Mus_musculus 0 326

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