C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB6A, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000098252 Rab6a-002 ENSMUSG00000030704 10090 + 7:100607690-100641268 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungOvaryPlacentaENSMUST00000098252
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Ovary Placenta
ENSMUST00000098252 10.086±1.47 47.730±10.82 13.644±1.66 7.217±1.31 18.702±3.81 5.680±0.73 8.142±3.16 6.390±1.49 13.063±3.23 19.658±8.84 10.605±5.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002ZZ CIL_0002ZZ_0002 CGP 7:100545751-100641268

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000042 ISS protein targeting to Golgi
GO:0003924 ISS GTPase activity
GO:0005515 IPI protein binding
GO:0005525 IEA:ISS GTP binding
GO:0005794 IDA:ISS Golgi apparatus
GO:0006184 ISS GTP catabolic process
GO:0006886 TAS intracellular protein transport
GO:0007264 IEA small GTPase mediated signal transduction
GO:0018125 ISO peptidyl-cysteine methylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000129190 rab6a-002 protein_coding Danio_rerio 0 625
ENSDART00000124579 rab6a-201 protein_coding Danio_rerio 0 569
ENSDART00000123613 rab6a-001 protein_coding Danio_rerio 0 569
ENSDART00000125528 protein_coding Danio_rerio 0 512
ENSDART00000075056 zgc:63637-002 protein_coding Danio_rerio 0 449
ENSDART00000138294 zgc:63637-003 protein_coding Danio_rerio 0 433
ENSDART00000131140 zgc:63637-201 protein_coding Danio_rerio 0 416
ENSDART00000045555 zgc:63637-001 protein_coding Danio_rerio 0 416
ENSDART00000042255 rab6bb-001 protein_coding Danio_rerio 0 359
ENSDART00000126805 rab6a-003 retained_intron Danio_rerio 0 355
ENSDART00000123624 rab6bb-002 retained_intron Danio_rerio 0 267
ENST00000310653 RAB6A-001 protein_coding Homo_sapiens 0 2804
ENST00000336083 RAB6A-002 protein_coding Homo_sapiens 0 2603
ENST00000400470 RAB6A-010 protein_coding Homo_sapiens 0 625
ENST00000410061 RAB6C-001 protein_coding Homo_sapiens 0 1598
ENST00000412425 RAB6C-AS1-002 processed_transcript Homo_sapiens 0 276
ENST00000484914 AC073869.1-001 transcribed_processed_pseudogene Homo_sapiens 0 1040
ENST00000536566 RAB6A-201 protein_coding Homo_sapiens 0 2372
ENST00000537446 RAB6A-011 nonsense_mediated_decay Homo_sapiens 0 375
ENST00000540771 RAB6A-014 protein_coding Homo_sapiens 0 510
ENST00000541588 RAB6A-013 protein_coding Homo_sapiens 0 531
ENST00000541795 RAB6A-005 retained_intron Homo_sapiens 0 425
ENST00000541973 RAB6A-006 protein_coding Homo_sapiens 0 1347
ENST00000545625 RAB6A-012 nonsense_mediated_decay Homo_sapiens 0 350
ENST00000623617 AC073869.1-002 processed_transcript Homo_sapiens 0 1042
ENST00000624615 RAB6C-AS1-003 TEC Homo_sapiens 0 645

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