C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB6A, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000032946 Rab6a-001 ENSMUSG00000030704 10090 + 7:100607586-100641268 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000032946
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000032946 13.428±5.87 20.113±5.26 34.821±4.46 60.504±13.31 23.680±15.15 39.783±7.20 9.187±0.48 11.716±2.17 15.738±8.34 31.138±6.59 26.445±3.35 39.954±18.38 18.476±7.99 12.641±5.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002ZZ CIL_0002ZZ_0002 CGP 7:100545751-100641268

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000042 ISS protein targeting to Golgi
GO:0001671 IEA ATPase activator activity
GO:0003924 ISS GTPase activity
GO:0005515 IPI protein binding
GO:0005525 ISS GTP binding
GO:0005794 ISS Golgi apparatus
GO:0006184 ISS GTP catabolic process
GO:0006886 TAS intracellular protein transport
GO:0007264 IEA small GTPase mediated signal transduction
GO:0018125 ISO peptidyl-cysteine methylation
GO:0032781 IEA positive regulation of ATPase activity
GO:0051117 IEA ATPase binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000124579 rab6a-201 protein_coding Danio_rerio 0 580
ENSDART00000123613 rab6a-001 protein_coding Danio_rerio 0 580
ENSDART00000129190 rab6a-002 protein_coding Danio_rerio 0 547
ENSDART00000125528 protein_coding Danio_rerio 0 523
ENSDART00000138294 zgc:63637-003 protein_coding Danio_rerio 0 427
ENSDART00000042255 rab6bb-001 protein_coding Danio_rerio 0 414
ENSDART00000131140 zgc:63637-201 protein_coding Danio_rerio 0 411
ENSDART00000045555 zgc:63637-001 protein_coding Danio_rerio 0 411
ENSDART00000075056 zgc:63637-002 protein_coding Danio_rerio 0 383
ENSDART00000123624 rab6bb-002 retained_intron Danio_rerio 0 322
ENSDART00000126805 rab6a-003 retained_intron Danio_rerio 0 294
ENST00000310653 RAB6A-001 protein_coding Homo_sapiens 0 2643
ENST00000336083 RAB6A-002 protein_coding Homo_sapiens 0 2752
ENST00000400470 RAB6A-010 protein_coding Homo_sapiens 0 774
ENST00000410061 RAB6C-001 protein_coding Homo_sapiens 0 1459
ENST00000412425 RAB6C-AS1-002 processed_transcript Homo_sapiens 3e-32 145
ENST00000484914 AC073869.1-001 transcribed_processed_pseudogene Homo_sapiens 0 902
ENST00000536566 RAB6A-201 protein_coding Homo_sapiens 0 2211
ENST00000537446 RAB6A-011 nonsense_mediated_decay Homo_sapiens 0 375
ENST00000540771 RAB6A-014 protein_coding Homo_sapiens 0 510
ENST00000541588 RAB6A-013 protein_coding Homo_sapiens 0 531
ENST00000541795 RAB6A-005 retained_intron Homo_sapiens 0 425
ENST00000541973 RAB6A-006 protein_coding Homo_sapiens 0 1186
ENST00000545625 RAB6A-012 nonsense_mediated_decay Homo_sapiens 0 350
ENST00000623617 AC073869.1-002 processed_transcript Homo_sapiens 0 904
ENST00000624615 RAB6C-AS1-003 TEC Homo_sapiens 0 507

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