C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB6A, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000107048 Rab6a-003 ENSMUSG00000030704 10090 + 7:100607410-100641268 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastOvaryPlacentaTestisENSMUST00000107048
Transcript ID Breast Ovary Placenta Testis
ENSMUST00000107048 5.164±0.00 9.524±3.53 9.695±2.52 2.293±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002ZZ CIL_0002ZZ_0002 CGP 7:100545751-100641268

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005794 IDA Golgi apparatus
GO:0006886 TAS intracellular protein transport
GO:0007264 IEA small GTPase mediated signal transduction
GO:0018125 ISO peptidyl-cysteine methylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000129190 rab6a-002 protein_coding Danio_rerio 0 568
ENSDART00000124579 rab6a-201 protein_coding Danio_rerio 0 512
ENSDART00000123613 rab6a-001 protein_coding Danio_rerio 0 512
ENSDART00000125528 protein_coding Danio_rerio 0 512
ENSDART00000075056 zgc:63637-002 protein_coding Danio_rerio 0 388
ENSDART00000138294 zgc:63637-003 protein_coding Danio_rerio 0 372
ENSDART00000126805 rab6a-003 retained_intron Danio_rerio 0 355
ENSDART00000131140 zgc:63637-201 protein_coding Danio_rerio 0 355
ENSDART00000045555 zgc:63637-001 protein_coding Danio_rerio 0 355
ENSDART00000042255 rab6bb-001 protein_coding Danio_rerio 0 329
ENSDART00000123624 rab6bb-002 retained_intron Danio_rerio 0 267
ENST00000310653 RAB6A-001 protein_coding Homo_sapiens 0 2370
ENST00000336083 RAB6A-002 protein_coding Homo_sapiens 0 2220
ENST00000400470 RAB6A-010 protein_coding Homo_sapiens 0 553
ENST00000410061 RAB6C-001 protein_coding Homo_sapiens 0 1299
ENST00000412425 RAB6C-AS1-002 processed_transcript Homo_sapiens 0 276
ENST00000484914 AC073869.1-001 transcribed_processed_pseudogene Homo_sapiens 0 922
ENST00000536566 RAB6A-201 protein_coding Homo_sapiens 0 2370
ENST00000537446 RAB6A-011 nonsense_mediated_decay Homo_sapiens 0 375
ENST00000540771 RAB6A-014 protein_coding Homo_sapiens 1e-25 121
ENST00000541588 RAB6A-013 protein_coding Homo_sapiens 0 193
ENST00000541795 RAB6A-005 retained_intron Homo_sapiens 2e-17 95
ENST00000541973 RAB6A-006 protein_coding Homo_sapiens 0 1345
ENST00000545625 RAB6A-012 nonsense_mediated_decay Homo_sapiens 0 350
ENST00000623617 AC073869.1-002 processed_transcript Homo_sapiens 0 924
ENST00000624615 RAB6C-AS1-003 TEC Homo_sapiens 0 320

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