C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ArfGAP with GTPase domain, ankyrin repeat and PH domain 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000336665 AGAP1-002 ENSG00000157985 9606 + 2:235494107-236126554 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastColonHeartLiverLungOvaryPlacentaENST00000336665
Transcript ID Bladder Breast Colon Heart Liver Lung Ovary Placenta
ENST00000336665 1.721±0.00 1.302±0.00 2.565±0.00 0.444±0.00 1.687±0.00 1.498±0.00 1.761±0.74 0.776±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003R3 CIL_0003R3_0001 CGP 2:234951973-236131800
CIL_0003RE CIL_0003RE_0001 CGP 2:235494089-236168369

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005525 IEA GTP binding
GO:0005543 IDA phospholipid binding
GO:0005622 IEA intracellular
GO:0005737 IEA cytoplasm
GO:0006184 IEA GTP catabolic process
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0008060 IEA ARF GTPase activator activity
GO:0008270 IEA zinc ion binding
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0032312 IEA regulation of ARF GTPase activity
GO:0043547 IEA positive regulation of GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000190096 Agap1-002 protein_coding Mus_musculus 0 3733
ENSMUST00000074945 Agap1-003 protein_coding Mus_musculus 0 3432
ENSMUST00000027521 Agap1-001 protein_coding Mus_musculus 0 2097
ENSMUST00000024123 Agap3-201 protein_coding Mus_musculus 0 664
ENSMUST00000185417 Agap1-004 retained_intron Mus_musculus 0 440

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