C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LIM domain and actin binding 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000341247 LIMA1-003 ENSG00000050405 9606 - 12:50175788-50283546 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000341247
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000341247 3.780±0.00 0.319±0.00 5.988±3.17 9.512±3.30 2.231±0.00 3.465±3.02 1.810±0.00 5.041±2.08 6.879±2.83 8.511±3.95 4.136±1.45

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PE CIL_0008PE_0001 VISTA 12:49905565-50507504
CIL_0008CC CIL_0008CC_0001 VISTA 12:49906068-50507455
CIL_0000LJ CIL_0000LJ_0001 CGP 12:50129306-50283546
CIL_00051T CIL_00051T_0001 CGP 12:50175788-50396622

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001725 IDA stress fiber
GO:0003785 IDA actin monomer binding
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005886 IDA plasma membrane
GO:0005925 IDA focal adhesion
GO:0008270 IEA zinc ion binding
GO:0015629 IDA actin cytoskeleton
GO:0030835 IEA:IDA negative regulation of actin filament depolymerization
GO:0031529 IDA ruffle organization
GO:0051015 IEA:IDA actin filament binding
GO:0051017 IEA:IDA actin filament bundle assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000073691 Lima1-001 protein_coding Mus_musculus 0 1718
ENSMUST00000109024 Lima1-003 protein_coding Mus_musculus 0 1487
ENSMUST00000172119 Lima1-004 retained_intron Mus_musculus 0 237
ENSMUST00000171450 Lima1-002 retained_intron Mus_musculus 0 196

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