C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LIM domain and actin binding 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000073691 Lima1-001 ENSMUSG00000023022 10090 - 15:99778470-99875428 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000073691
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000073691 7.106±3.78 5.342±1.42 14.213±0.43 2.110±1.35 3.606±0.90 48.136±3.60 1.394±0.33 13.586±0.52 5.957±3.55 9.441±0.99 0.592±0.24 4.514±1.47 17.557±10.71 1.284±0.55

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PE CIL_0008PE_0002 VISTA 15:99507076-100109694
CIL_0008CC CIL_0008CC_0002 VISTA 15:99507743-100109214
CIL_0000LJ CIL_0000LJ_0002 CGP 15:99734881-99875428
CIL_00051T CIL_00051T_0002 CGP 15:99778470-99967075

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001725 ISS stress fiber
GO:0003785 ISS actin monomer binding
GO:0005925 ISS focal adhesion
GO:0008270 IEA zinc ion binding
GO:0015629 IDA actin cytoskeleton
GO:0030835 ISS negative regulation of actin filament depolymerization
GO:0031529 ISS ruffle organization
GO:0051015 ISS actin filament binding
GO:0051017 ISS actin filament bundle assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000341247 LIMA1-003 protein_coding Homo_sapiens 0 1718
ENST00000394943 LIMA1-001 protein_coding Homo_sapiens 0 1703
ENST00000547825 LIMA1-007 protein_coding Homo_sapiens 0 961
ENST00000549064 LIMA1-014 retained_intron Homo_sapiens 0 518
ENST00000550592 LIMA1-008 protein_coding Homo_sapiens 0 383
ENST00000550611 LIMA1-010 processed_transcript Homo_sapiens 5.00264e-43 178
ENST00000551691 LIMA1-009 protein_coding Homo_sapiens 0 407
ENST00000552338 LIMA1-015 processed_transcript Homo_sapiens 0 436
ENST00000552491 LIMA1-017 protein_coding Homo_sapiens 0 935
ENST00000552720 LIMA1-005 nonsense_mediated_decay Homo_sapiens 0 924
ENST00000552783 LIMA1-002 protein_coding Homo_sapiens 0 1472
ENST00000552823 LIMA1-006 protein_coding Homo_sapiens 0 1365
ENST00000552909 LIMA1-004 protein_coding Homo_sapiens 0 1356

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