C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LIM domain and actin binding 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000109024 Lima1-003 ENSMUSG00000023022 10090 - 15:99778470-99820143 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000109024
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000109024 10.865±4.21 2.468±0.00 47.552±1.33 3.945±0.82 7.907±1.32 2.488±0.56 3.981±0.63 1.882±0.41 7.221±1.10 1.161±0.30 9.063±3.76 21.299±7.19 0.377±0.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PE CIL_0008PE_0002 VISTA 15:99507076-100109694
CIL_0008CC CIL_0008CC_0002 VISTA 15:99507743-100109214
CIL_0000LJ CIL_0000LJ_0002 CGP 15:99734881-99875428
CIL_00051T CIL_00051T_0002 CGP 15:99778470-99967075

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001725 ISS stress fiber
GO:0003785 ISS actin monomer binding
GO:0005925 ISS focal adhesion
GO:0008270 IEA zinc ion binding
GO:0015629 IDA actin cytoskeleton
GO:0030835 ISS negative regulation of actin filament depolymerization
GO:0031529 ISS ruffle organization
GO:0051015 ISS actin filament binding
GO:0051017 ISS actin filament bundle assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000341247 LIMA1-003 protein_coding Homo_sapiens 0 1487
ENST00000394943 LIMA1-001 protein_coding Homo_sapiens 0 1472
ENST00000547825 LIMA1-007 protein_coding Homo_sapiens 0 961
ENST00000549064 LIMA1-014 retained_intron Homo_sapiens 0 518
ENST00000550592 LIMA1-008 protein_coding Homo_sapiens 9e-36 154
ENST00000550611 LIMA1-010 processed_transcript Homo_sapiens 9.94922e-44 180
ENST00000551691 LIMA1-009 protein_coding Homo_sapiens 5.99756e-43 178
ENST00000552338 LIMA1-015 processed_transcript Homo_sapiens 0 436
ENST00000552491 LIMA1-017 protein_coding Homo_sapiens 0 935
ENST00000552720 LIMA1-005 nonsense_mediated_decay Homo_sapiens 0 795
ENST00000552783 LIMA1-002 protein_coding Homo_sapiens 0 1650
ENST00000552823 LIMA1-006 protein_coding Homo_sapiens 0 1365
ENST00000552909 LIMA1-004 protein_coding Homo_sapiens 0 1356

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