C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin-conjugating enzyme E2D 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000343106 UBE2D3-002 ENSG00000109332 9606 - 4:102796134-102827122 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryENST00000343106
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary
ENST00000343106 25.162±0.00 14.651±0.00 19.934±0.00 20.336±2.43 21.826±4.34 12.743±3.63 14.027±2.68 18.579±0.00 22.915±1.29 25.877±9.39 17.220±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 TAS negative regulation of transcription from RNA polymerase II promoter
GO:0000209 IDA protein polyubiquitination
GO:0002224 TAS toll-like receptor signaling pathway
GO:0002756 TAS MyD88-independent toll-like receptor signaling pathway
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005654 TAS nucleoplasm
GO:0005768 IEA endosome
GO:0005829 TAS cytosol
GO:0005886 IEA plasma membrane
GO:0006281 IEA DNA repair
GO:0006351 TAS transcription, DNA-templated
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0006464 TAS cellular protein modification process
GO:0006511 TAS ubiquitin-dependent protein catabolic process
GO:0006513 IDA protein monoubiquitination
GO:0006915 IEA apoptotic process
GO:0007179 TAS transforming growth factor beta receptor signaling pathway
GO:0008152 IEA metabolic process
GO:0010467 TAS gene expression
GO:0016567 IDA protein ubiquitination
GO:0016881 IEA acid-amino acid ligase activity
GO:0030509 TAS BMP signaling pathway
GO:0032480 TAS negative regulation of type I interferon production
GO:0034138 TAS toll-like receptor 3 signaling pathway
GO:0034142 TAS toll-like receptor 4 signaling pathway
GO:0035666 TAS TRIF-dependent toll-like receptor signaling pathway
GO:0043161 IDA proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0045087 TAS innate immune response
GO:0061418 TAS regulation of transcription from RNA polymerase II promoter in response to hypoxia
GO:0070062 IDA extracellular vesicular exosome
GO:0070936 IDA protein K48-linked ubiquitination
GO:0070979 IDA protein K11-linked ubiquitination
GO:0071456 TAS cellular response to hypoxia

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000166033 Ube2d3-202 protein_coding Mus_musculus 0 2087
ENSMUST00000106291 Ube2d3-201 protein_coding Mus_musculus 0 1450
ENSMUST00000132484 Spopl-001 protein_coding Mus_musculus 0 1155
ENSMUST00000119320 Gm15361-001 processed_pseudogene Mus_musculus 0 664
ENSMUST00000117197 Gm4596-001 processed_pseudogene Mus_musculus 0 658
ENSMUST00000117500 Gm13331-001 processed_pseudogene Mus_musculus 0 625
ENSMUST00000170693 Ube2d2a-202 protein_coding Mus_musculus 0 414
ENSMUST00000167406 Ube2d2a-201 protein_coding Mus_musculus 0 414
ENSMUST00000036976 Gm9762-201 processed_pseudogene Mus_musculus 0 411
ENSMUST00000145305 Gm14368-001 processed_pseudogene Mus_musculus 0 403
ENSMUST00000118883 Gm14359-001 processed_pseudogene Mus_musculus 0 399
ENSMUST00000122304 Gm14363-001 processed_pseudogene Mus_musculus 0 383
ENSMUST00000120396 Gm14331-001 processed_pseudogene Mus_musculus 0 366
ENSMUST00000072578 Ube2d2b-001 protein_coding Mus_musculus 0 364
ENSMUST00000118458 Gm14358-001 processed_pseudogene Mus_musculus 0 337
ENSMUST00000120670 Gm14360-001 processed_pseudogene Mus_musculus 0 333
ENSMUST00000131442 Gm15274-001 processed_pseudogene Mus_musculus 0 311
ENSMUST00000151262 Gm15259-001 processed_pseudogene Mus_musculus 0 305
ENSMUST00000139887 Gm21979-001 processed_pseudogene Mus_musculus 0 300
ENSMUST00000140849 Gm9498-001 processed_pseudogene Mus_musculus 0 300
ENSMUST00000155593 Gm15279-001 processed_pseudogene Mus_musculus 0 289

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