C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CDK5 regulatory subunit associated protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000349780 CDK5RAP2-005 ENSG00000136861 9606 - 9:120388870-120580158 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000349780
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000349780 3.859±0.00 2.686±0.00 0.303±0.00 2.953±1.19 1.689±0.00 2.060±0.34 1.320±0.00 1.917±0.03 8.475±6.38 4.551±1.34 2.307±0.33 4.417±0.60

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004FK CIL_0004FK_0001 CGP 9:119153458-120580170
CIL_0004FL CIL_0004FL_0001 CGP 9:120388869-120714470

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000086 TAS G2/M transition of mitotic cell cycle
GO:0000132 ISS establishment of mitotic spindle orientation
GO:0000226 IDA microtubule cytoskeleton organization
GO:0000242 IDA pericentriolar material
GO:0000278 TAS mitotic cell cycle
GO:0000922 IDA spindle pole
GO:0001578 IDA microtubule bundle formation
GO:0005515 IPI protein binding
GO:0005516 IPI calmodulin binding
GO:0005737 IDA cytoplasm
GO:0005794 IDA Golgi apparatus
GO:0005813 IDA centrosome
GO:0005829 TAS cytosol
GO:0005856 NAS cytoskeleton
GO:0005874 IDA microtubule
GO:0007059 IMP chromosome segregation
GO:0007420 ISS brain development
GO:0008017 IDA microtubule binding
GO:0015631 IPI tubulin binding
GO:0019901 IPI protein kinase binding
GO:0022008 ISS neurogenesis
GO:0030054 IDA cell junction
GO:0032403 IEA protein complex binding
GO:0044212 IDA transcription regulatory region DNA binding
GO:0045664 NAS regulation of neuron differentiation
GO:0045665 IEA negative regulation of neuron differentiation
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0046600 ISS negative regulation of centriole replication
GO:0048471 IDA perinuclear region of cytoplasm
GO:0051297 IMP centrosome organization
GO:0070062 IDA extracellular vesicular exosome
GO:0090231 IDA regulation of spindle checkpoint

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000144099 Cdk5rap2-001 protein_coding Mus_musculus 0 2045
ENSMUST00000076541 Cdk5rap2-003 nonsense_mediated_decay Mus_musculus 0 1382
ENSMUST00000138561 Cdk5rap2-006 protein_coding Mus_musculus 0 464
ENSMUST00000140108 Cdk5rap2-002 protein_coding Mus_musculus 0 209

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