C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CDK5 regulatory subunit associated protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000144099 Cdk5rap2-001 ENSMUSG00000039298 10090 - 4:70216856-70410443 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000144099
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000144099 0.835±0.39 1.785±0.29 0.935±0.12 3.895±1.81 0.974±0.25 0.738±0.13 0.426±0.10 0.724±0.08 0.848±0.63 0.867±0.12 0.341±0.22 3.671±0.32 0.866±0.41

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004FK CIL_0004FK_0002 CGP 4:68761514-70410443
CIL_0004FL CIL_0004FL_0002 CGP 4:70216856-70534995

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000132 IMP establishment of mitotic spindle orientation
GO:0000226 IEA microtubule cytoskeleton organization
GO:0000242 ISS pericentriolar material
GO:0000922 ISS spindle pole
GO:0001578 ISS microtubule bundle formation
GO:0005515 IPI protein binding
GO:0005516 IEA calmodulin binding
GO:0005737 IEA cytoplasm
GO:0005794 ISS Golgi apparatus
GO:0005813 ISS centrosome
GO:0005874 ISS microtubule
GO:0007059 ISS chromosome segregation
GO:0007420 IMP brain development
GO:0008017 IEA microtubule binding
GO:0015631 IEA tubulin binding
GO:0019901 ISS protein kinase binding
GO:0022008 IMP neurogenesis
GO:0030054 IEA cell junction
GO:0032403 IEA protein complex binding
GO:0044212 ISS transcription regulatory region DNA binding
GO:0045665 IMP negative regulation of neuron differentiation
GO:0045893 ISS positive regulation of transcription, DNA-templated
GO:0046600 IMP negative regulation of centriole replication
GO:0048471 ISS perinuclear region of cytoplasm
GO:0051297 ISS centrosome organization
GO:0070062 IEA extracellular vesicular exosome
GO:0090231 ISS regulation of spindle checkpoint

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000349780 CDK5RAP2-005 protein_coding Homo_sapiens 0 2045
ENST00000360190 CDK5RAP2-014 protein_coding Homo_sapiens 0 2045
ENST00000360822 CDK5RAP2-201 protein_coding Homo_sapiens 0 1897
ENST00000416449 CDK5RAP2-008 protein_coding Homo_sapiens 0 1382
ENST00000425647 CDK5RAP2-013 protein_coding Homo_sapiens 0 1266
ENST00000433194 CDK5RAP2-003 processed_transcript Homo_sapiens 0 564
ENST00000468989 CDK5RAP2-018 processed_transcript Homo_sapiens 0 368
ENST00000472883 CDK5RAP2-011 processed_transcript Homo_sapiens 0 196
ENST00000473282 CDK5RAP2-012 nonsense_mediated_decay Homo_sapiens 0 1382
ENST00000474262 CDK5RAP2-004 retained_intron Homo_sapiens 0 385
ENST00000480112 CDK5RAP2-016 nonsense_mediated_decay Homo_sapiens 0 1773
ENST00000480467 CDK5RAP2-002 processed_transcript Homo_sapiens 0 564
ENST00000481266 CDK5RAP2-010 nonsense_mediated_decay Homo_sapiens 0 935
ENST00000482047 CDK5RAP2-017 protein_coding Homo_sapiens 0 433
ENST00000483412 CDK5RAP2-015 retained_intron Homo_sapiens 0 1382
ENST00000484546 CDK5RAP2-001 retained_intron Homo_sapiens 0 566

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