C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004FL_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000136861-ENSG00000106780 CGP 9606 9:120388869-120714470
GeneTranscriptPositionBiotype
ENSG00000106780 (MEGF9)
multiple EGF-like-domains 9 		ENST00000373930 (MEGF9-001) 120600813-120714470 protein_coding
ENSG00000136861 (CDK5RAP2)
CDK5 regulatory subunit associated protein 2 		ENST00000349780 (CDK5RAP2-005) 120388870-120580158 protein_coding
ENST00000360190 (CDK5RAP2-014) 120388876-120580158 protein_coding
ENST00000360822 (CDK5RAP2-201) 120388869-120580170 protein_coding
ENST00000416449 (CDK5RAP2-008) 120389198-120477354 protein_coding
ENST00000425647 (CDK5RAP2-013) 120389201-120448072 protein_coding
ENST00000433194 (CDK5RAP2-003) 120389199-120403452 processed_transcript
ENST00000468989 (CDK5RAP2-018) 120439518-120440419 processed_transcript
ENST00000472883 (CDK5RAP2-011) 120527826-120539120 processed_transcript
ENST00000473282 (CDK5RAP2-012) 120389196-120580005 nonsense_mediated_decay
ENST00000474262 (CDK5RAP2-004) 120389196-120401019 retained_intron
ENST00000479584 (CDK5RAP2-009) 120439790-120458522 processed_transcript
ENST00000480112 (CDK5RAP2-016) 120389196-120580005 nonsense_mediated_decay
ENST00000480467 (CDK5RAP2-002) 120389199-120403495 processed_transcript
ENST00000481266 (CDK5RAP2-010) 120527906-120580061 nonsense_mediated_decay
ENST00000482047 (CDK5RAP2-017) 120518600-120532555 protein_coding
ENST00000483412 (CDK5RAP2-015) 120406146-120536437 retained_intron
ENST00000484546 (CDK5RAP2-001) 120389199-120403662 retained_intron
ENST00000491334 (CDK5RAP2-007) 120571747-120580170 retained_intron
ENST00000495406 (CDK5RAP2-006) 120389195-120390277 retained_intron
CIL_0004FL_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000039298-ENSMUSG00000039270 CGP 10090 4:70216856-70534995
GeneTranscriptPositionBiotype
ENSMUSG00000039270 (Megf9)
multiple EGF-like-domains 9 		ENSMUST00000037881 (Megf9-002) 70461826-70534995 nonsense_mediated_decay
ENSMUST00000107359 (Megf9-001) 70427065-70534928 protein_coding
ENSMUSG00000039298 (Cdk5rap2)
CDK5 regulatory subunit associated protein 2 		ENSMUST00000076541 (Cdk5rap2-003) 70223023-70410418 nonsense_mediated_decay
ENSMUST00000124251 (Cdk5rap2-004) 70242471-70243852 processed_transcript
ENSMUST00000126416 (Cdk5rap2-005) 70398886-70403541 processed_transcript
ENSMUST00000138561 (Cdk5rap2-006) 70238350-70264680 protein_coding
ENSMUST00000140108 (Cdk5rap2-002) 70249009-70254736 protein_coding
ENSMUST00000144099 (Cdk5rap2-001) 70216856-70410443 protein_coding
ENSMUSG00000088367 (Gm26320)
predicted gene, 26320 		ENSMUST00000157742 (Gm26320-201) 70412618-70412923 misc_RNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004FL_0001ENSG00000106780ENST00000373930ENSG00000136861ENST00000349780ENST00000360190ENST00000360822ENST00000416449ENST00000425647ENST00000433194ENST00000468989ENST00000472883ENST00000473282ENST00000474262ENST00000479584ENST00000480112ENST00000480467ENST00000481266ENST00000482047ENST00000483412ENST00000484546ENST00000491334ENST00000495406CIL_0004FL_0002ENSMUSG00000039270ENSMUST00000037881ENSMUST00000107359ENSMUSG00000039298ENSMUST00000076541ENSMUST00000124251ENSMUST00000126416ENSMUST00000138561ENSMUST00000140108ENSMUST00000144099ENSMUSG00000088367ENSMUST00000157742
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004FL_0001ENSG00000106780ENST00000373930ENSG00000136861ENST00000349780ENST00000360190ENST00000360822ENST00000416449ENST00000425647ENST00000473282ENST00000480112ENST00000483412CIL_0004FL_0002ENSMUSG00000039270ENSMUST00000037881ENSMUST00000107359ENSMUSG00000039298ENSMUST00000076541ENSMUST00000138561ENSMUST00000140108ENSMUST00000144099ENSMUSG00000088367ENSMUST00000157742
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000106780 ENST00000373930 6.543±0.00 1.801±0.00 2.587±0.00 14.153±5.97 10.321±9.64 3.616±1.88 1.987±1.12 6.584±0.14 6.919±2.17 7.817±1.41 1.807±0.70 2.394±0.72 1.822±0.31 2.655±1.02
ENSG00000136861 ENST00000349780 3.859±0.00 2.686±0.00 N/A 0.303±0.00 2.953±1.19 1.689±0.00 N/A 2.060±0.34 1.320±0.00 1.917±0.03 8.475±6.38 4.551±1.34 2.307±0.33 4.417±0.60
ENST00000360190 N/A N/A 0.839±0.00 0.299±0.00 1.923±0.00 2.811±0.44 1.178±0.62 N/A 0.775±0.00 N/A N/A 4.157±0.62 2.435±0.00 4.749±1.90
ENST00000360822 N/A N/A N/A 1.259±0.88 N/A N/A 1.898±0.00 N/A 0.830±0.00 N/A N/A 0.891±0.00 N/A N/A
ENST00000416449 N/A 1.873±0.00 N/A 2.855±0.00 N/A 1.888±0.00 5.017±0.00 1.551±0.00 0.926±0.00 N/A 14.386±0.00 N/A N/A N/A
ENST00000425647 2.842±0.00 4.779±0.00 N/A N/A 6.308±0.00 4.349±0.00 N/A N/A N/A 1.526±0.00 12.859±0.00 7.496±1.71 1.617±0.44 7.145±0.00
ENST00000433194 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468989 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472883 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473282 N/A N/A N/A N/A N/A N/A 0.225±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000474262 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479584 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480112 N/A N/A 0.445±0.00 N/A N/A N/A N/A N/A 0.511±0.00 N/A 1.338±0.00 N/A N/A N/A
ENST00000480467 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481266 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482047 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483412 N/A N/A 0.439±0.00 0.411±0.00 N/A N/A 0.317±0.00 0.742±0.00 0.727±0.00 0.887±0.00 N/A 0.877±0.00 N/A N/A
ENST00000484546 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491334 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495406 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000039270 ENSMUST00000037881 2.967±0.92 10.264±1.69 N/A N/A 7.049±3.10 3.360±0.86 0.969±0.19 2.220±0.46 2.180±0.97 7.050±2.51 N/A 4.031±1.44 N/A 1.908±0.18
ENSMUST00000107359 5.229±1.54 1.950±0.57 4.371±0.18 7.724±4.39 2.927±0.64 1.007±0.24 1.629±0.19 1.997±0.21 1.862±0.66 4.880±0.73 0.570±0.07 1.932±0.82 2.023±1.00 1.588±0.29
ENSMUSG00000039298 ENSMUST00000076541 1.153±0.41 4.832±1.08 1.028±0.21 1.578±0.00 1.076±0.18 1.083±0.10 0.527±0.18 0.976±0.08 1.052±0.83 0.828±0.15 0.501±0.08 5.147±2.09 3.028±1.91 30.858±14.34
ENSMUST00000124251 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000126416 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138561 N/A N/A N/A N/A N/A N/A N/A N/A 0.776±0.12 N/A N/A N/A N/A N/A
ENSMUST00000140108 N/A N/A N/A 55.000±0.00 N/A N/A N/A N/A 24.483±0.00 N/A N/A N/A N/A N/A
ENSMUST00000144099 0.835±0.39 1.785±0.29 0.935±0.12 3.895±1.81 0.974±0.25 0.738±0.13 0.426±0.10 0.724±0.08 0.848±0.63 0.867±0.12 0.341±0.22 3.671±0.32 0.866±0.41 N/A
ENSMUSG00000088367 ENSMUST00000157742 N/A N/A N/A 0.085±0.03 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.253±0.00

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