C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CDK5 regulatory subunit associated protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000076541 Cdk5rap2-003 ENSMUSG00000039298 10090 - 4:70223023-70410418 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000076541
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000076541 1.153±0.41 4.832±1.08 1.028±0.21 1.578±0.00 1.076±0.18 1.083±0.10 0.527±0.18 0.976±0.08 1.052±0.83 0.828±0.15 0.501±0.08 5.147±2.09 3.028±1.91 30.858±14.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004FK CIL_0004FK_0002 CGP 4:68761514-70410443
CIL_0004FL CIL_0004FL_0002 CGP 4:70216856-70534995

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005813 IDA centrosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000349780 CDK5RAP2-005 protein_coding Homo_sapiens 0 1382
ENST00000360190 CDK5RAP2-014 protein_coding Homo_sapiens 0 1973
ENST00000360822 CDK5RAP2-201 protein_coding Homo_sapiens 0 1382
ENST00000416449 CDK5RAP2-008 protein_coding Homo_sapiens 0 1382
ENST00000425647 CDK5RAP2-013 protein_coding Homo_sapiens 0 1266
ENST00000433194 CDK5RAP2-003 processed_transcript Homo_sapiens 0 564
ENST00000468989 CDK5RAP2-018 processed_transcript Homo_sapiens 0 368
ENST00000472883 CDK5RAP2-011 processed_transcript Homo_sapiens 0 196
ENST00000473282 CDK5RAP2-012 nonsense_mediated_decay Homo_sapiens 0 1382
ENST00000474262 CDK5RAP2-004 retained_intron Homo_sapiens 0 385
ENST00000480112 CDK5RAP2-016 nonsense_mediated_decay Homo_sapiens 0 1382
ENST00000480467 CDK5RAP2-002 processed_transcript Homo_sapiens 0 564
ENST00000481266 CDK5RAP2-010 nonsense_mediated_decay Homo_sapiens 0 584
ENST00000482047 CDK5RAP2-017 protein_coding Homo_sapiens 0 433
ENST00000483412 CDK5RAP2-015 retained_intron Homo_sapiens 0 1382
ENST00000484546 CDK5RAP2-001 retained_intron Homo_sapiens 0 566

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