C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: CDK5 regulatory subunit associated protein 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000136861 CDK5RAP2 9606 - 9:120388869-120580170 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000349780 CDK5RAP2-005 120388870-120580158 protein_coding
  ENST00000360190 CDK5RAP2-014 120388876-120580158 protein_coding
  ENST00000360822 CDK5RAP2-201 120388869-120580170 protein_coding
  ENST00000416449 CDK5RAP2-008 120389198-120477354 protein_coding
  ENST00000425647 CDK5RAP2-013 120389201-120448072 protein_coding
  ENST00000433194 CDK5RAP2-003 120389199-120403452 processed_transcript
  ENST00000468989 CDK5RAP2-018 120439518-120440419 processed_transcript
  ENST00000472883 CDK5RAP2-011 120527826-120539120 processed_transcript
  ENST00000473282 CDK5RAP2-012 120389196-120580005 nonsense_mediated_decay
  ENST00000474262 CDK5RAP2-004 120389196-120401019 retained_intron
  ENST00000479584 CDK5RAP2-009 120439790-120458522 processed_transcript
  ENST00000480112 CDK5RAP2-016 120389196-120580005 nonsense_mediated_decay
  ENST00000480467 CDK5RAP2-002 120389199-120403495 processed_transcript
  ENST00000481266 CDK5RAP2-010 120527906-120580061 nonsense_mediated_decay
  ENST00000482047 CDK5RAP2-017 120518600-120532555 protein_coding
  ENST00000483412 CDK5RAP2-015 120406146-120536437 retained_intron
  ENST00000484546 CDK5RAP2-001 120389199-120403662 retained_intron
  ENST00000491334 CDK5RAP2-007 120571747-120580170 retained_intron
  ENST00000495406 CDK5RAP2-006 120389195-120390277 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000349780ENST00000360190ENST00000360822ENST00000416449ENST00000425647ENST00000473282ENST00000480112ENST00000483412
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000349780 3.859±0.00 2.686±0.00 N/A 0.303±0.00 2.953±1.19 1.689±0.00 N/A 2.060±0.34 1.320±0.00 1.917±0.03 8.475±6.38 4.551±1.34 2.307±0.33 4.417±0.60
ENST00000360190 N/A N/A 0.839±0.00 0.299±0.00 1.923±0.00 2.811±0.44 1.178±0.62 N/A 0.775±0.00 N/A N/A 4.157±0.62 2.435±0.00 4.749±1.90
ENST00000360822 N/A N/A N/A 1.259±0.88 N/A N/A 1.898±0.00 N/A 0.830±0.00 N/A N/A 0.891±0.00 N/A N/A
ENST00000416449 N/A 1.873±0.00 N/A 2.855±0.00 N/A 1.888±0.00 5.017±0.00 1.551±0.00 0.926±0.00 N/A 14.386±0.00 N/A N/A N/A
ENST00000425647 2.842±0.00 4.779±0.00 N/A N/A 6.308±0.00 4.349±0.00 N/A N/A N/A 1.526±0.00 12.859±0.00 7.496±1.71 1.617±0.44 7.145±0.00
ENST00000473282 N/A N/A N/A N/A N/A N/A 0.225±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000480112 N/A N/A 0.445±0.00 N/A N/A N/A N/A N/A 0.511±0.00 N/A 1.338±0.00 N/A N/A N/A
ENST00000483412 N/A N/A 0.439±0.00 0.411±0.00 N/A N/A 0.317±0.00 0.742±0.00 0.727±0.00 0.887±0.00 N/A 0.877±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004FK CIL_0004FK_0001 CGP 9:119153458-120580170
CIL_0004FL CIL_0004FL_0001 CGP 9:120388869-120714470

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000086 TAS G2/M transition of mitotic cell cycle
GO:0000132 ISS establishment of mitotic spindle orientation
GO:0000226 IDA microtubule cytoskeleton organization
GO:0000242 IDA pericentriolar material
GO:0000278 TAS mitotic cell cycle
GO:0000922 IDA spindle pole
GO:0001578 IDA microtubule bundle formation
GO:0005515 IPI protein binding
GO:0005516 IPI calmodulin binding
GO:0005737 IDA cytoplasm
GO:0005794 IDA Golgi apparatus
GO:0005813 IDA centrosome
GO:0005829 TAS cytosol
GO:0005856 NAS cytoskeleton
GO:0005874 IDA microtubule
GO:0007059 IMP chromosome segregation
GO:0007420 ISS brain development
GO:0008017 IDA microtubule binding
GO:0015631 IPI tubulin binding
GO:0019901 IPI protein kinase binding
GO:0022008 ISS neurogenesis
GO:0030054 IDA cell junction
GO:0032403 IEA protein complex binding
GO:0044212 IDA transcription regulatory region DNA binding
GO:0045664 NAS regulation of neuron differentiation
GO:0045665 IEA negative regulation of neuron differentiation
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0046600 ISS negative regulation of centriole replication
GO:0048471 IDA perinuclear region of cytoplasm
GO:0051297 IMP centrosome organization
GO:0070062 IDA extracellular vesicular exosome
GO:0090231 IDA regulation of spindle checkpoint

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000024219 CDK5RAP2 CDK5 regulatory subunit associated protein 2 protein_coding Danio_rerio
ENSMUSG00000039298 Cdk5rap2 CDK5 regulatory subunit associated protein 2 protein_coding Mus_musculus

Loading