C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 11 (proton-coupled divalent metal ion transporter), member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000354352 SLC11A1-003 ENSG00000018280 9606 + 2:218382248-218395323 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastKidneyLiverLungOvaryPlacentaENST00000354352
Transcript ID Adipose Breast Kidney Liver Lung Ovary Placenta
ENST00000354352 7.010±0.00 0.558±0.00 1.756±0.00 0.641±0.00 15.428±9.37 1.049±0.00 5.559±2.76

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00054V CIL_00054V_0001 CGP 2:218356856-218396894
CIL_0005VF CIL_0005VF_0001 CGP 2:218382029-218405941

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005215 IEA transporter activity
GO:0005575 ND cellular_component
GO:0006810 IEA transport
GO:0006955 NAS immune response
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000027368 Slc11a1-001 protein_coding Mus_musculus 0 1188
ENSMUST00000187516 Slc11a1-011 protein_coding Mus_musculus 0 1188
ENSMUST00000147233 Slc11a1-002 retained_intron Mus_musculus 0 785
ENSMUST00000133896 Slc11a1-007 retained_intron Mus_musculus 0 525
ENSMUST00000136786 Slc11a1-004 processed_transcript Mus_musculus 0 497
ENSMUST00000131511 Slc11a1-003 retained_intron Mus_musculus 0 442
ENSMUST00000149166 Slc11a1-009 processed_transcript Mus_musculus 0 370
ENSMUST00000127487 Slc11a1-008 retained_intron Mus_musculus 0 217
ENSMUST00000135137 Slc11a1-005 processed_transcript Mus_musculus 4.2039e-45 187
ENSMUST00000155865 Slc11a1-006 processed_transcript Mus_musculus 5e-34 150

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