C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000147233 Slc11a1-002 ENSMUSG00000026177 10090 + 1:74375203-74386052 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000147233
Transcript ID Adipose Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000147233 2.965±0.96 1.163±0.06 3.474±0.32 1.093±0.20 0.530±0.04 0.442±0.00 1.899±0.59 1.496±0.39 0.107±0.00 1.529±0.48 0.239±0.00 0.321±0.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00054V CIL_00054V_0002 CGP 1:74362108-74386062
CIL_0005VF CIL_0005VF_0002 CGP 1:74375195-74397285

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000233202 SLC11A1-001 protein_coding Homo_sapiens 0 1127
ENST00000354352 SLC11A1-003 nonsense_mediated_decay Homo_sapiens 0 785
ENST00000460592 SLC11A1-018 retained_intron Homo_sapiens 3e-32 141
ENST00000465984 SLC11A1-004 retained_intron Homo_sapiens 0 651
ENST00000468221 SLC11A1-009 retained_intron Homo_sapiens 0 928
ENST00000469449 SLC11A1-011 retained_intron Homo_sapiens 0 300
ENST00000469799 SLC11A1-016 retained_intron Homo_sapiens 0 281
ENST00000471875 SLC11A1-015 retained_intron Homo_sapiens 0 283
ENST00000473367 SLC11A1-013 nonsense_mediated_decay Homo_sapiens 0 200
ENST00000475225 SLC11A1-002 retained_intron Homo_sapiens 0 329
ENST00000481524 SLC11A1-014 nonsense_mediated_decay Homo_sapiens 0 366
ENST00000483487 SLC11A1-017 retained_intron Homo_sapiens 0 425
ENST00000490872 SLC11A1-019 retained_intron Homo_sapiens 0 289
ENST00000492413 SLC11A1-006 retained_intron Homo_sapiens 0 481
ENST00000494322 SLC11A1-010 retained_intron Homo_sapiens 0 1129
ENST00000539932 SLC11A1-007 nonsense_mediated_decay Homo_sapiens 0 1072

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