C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00054V_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000158428-ENSG00000018280 CGP 9606 2:218356856-218396894
GeneTranscriptPositionBiotype
ENSG00000018280 (SLC11A1)
solute carrier family 11 (proton-coupled divalent metal ion transporter), member 1 		ENST00000233202 (SLC11A1-001) 218382029-218396894 protein_coding
ENST00000354352 (SLC11A1-003) 218382248-218395323 nonsense_mediated_decay
ENST00000460592 (SLC11A1-018) 218385155-218385574 retained_intron
ENST00000465984 (SLC11A1-004) 218382188-218396026 retained_intron
ENST00000468221 (SLC11A1-009) 218382029-218396027 retained_intron
ENST00000468721 (SLC11A1-005) 218392840-218394186 retained_intron
ENST00000469449 (SLC11A1-011) 218383687-218388385 retained_intron
ENST00000469799 (SLC11A1-016) 218382279-218387112 retained_intron
ENST00000471875 (SLC11A1-015) 218382279-218386772 retained_intron
ENST00000473367 (SLC11A1-013) 218382169-218386667 nonsense_mediated_decay
ENST00000475225 (SLC11A1-002) 218382302-218388385 retained_intron
ENST00000481524 (SLC11A1-014) 218382273-218387584 nonsense_mediated_decay
ENST00000483487 (SLC11A1-017) 218384167-218386813 retained_intron
ENST00000490536 (SLC11A1-012) 218392590-218394635 retained_intron
ENST00000490872 (SLC11A1-019) 218389965-218391771 retained_intron
ENST00000492413 (SLC11A1-006) 218382287-218387134 retained_intron
ENST00000494322 (SLC11A1-010) 218382273-218392635 retained_intron
ENST00000539932 (SLC11A1-007) 218382203-218392692 nonsense_mediated_decay
ENSG00000158428 (CATIP)
ciliogenesis associated TTC17 interacting protein 		ENST00000289388 (CATIP-001) 218356856-218368094 protein_coding
ENST00000480532 (CATIP-004) 218356863-218357790 retained_intron
ENST00000481940 (CATIP-002) 218357703-218368099 processed_transcript
ENST00000494447 (CATIP-003) 218365508-218368093 retained_intron
ENST00000495773 (CATIP-005) 218357485-218360630 retained_intron
ENSG00000225062 (CATIP-AS1)
CATIP antisense RNA 1 		ENST00000425481 (CATIP-AS1-002) 218366666-218367322 retained_intron
ENST00000441749 (CATIP-AS1-001) 218366665-218367835 antisense
ENSG00000237281 (CATIP-AS2)
CATIP antisense RNA 2 		ENST00000411433 (CATIP-AS2-001) 218326889-218357966 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_00054V_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000073650-ENSMUSG00000026177 CGP 10090 1:74362108-74386062
GeneTranscriptPositionBiotype
ENSMUSG00000026177 (Slc11a1)
solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1 		ENSMUST00000027368 (Slc11a1-001) 74375203-74386062 protein_coding
ENSMUST00000127487 (Slc11a1-008) 74383034-74383834 retained_intron
ENSMUST00000131511 (Slc11a1-003) 74375225-74386051 retained_intron
ENSMUST00000133896 (Slc11a1-007) 74381651-74384173 retained_intron
ENSMUST00000134189 (Slc11a1-010) 74383600-74385197 processed_transcript
ENSMUST00000135137 (Slc11a1-005) 74375572-74376890 processed_transcript
ENSMUST00000136786 (Slc11a1-004) 74375253-74381826 processed_transcript
ENSMUST00000147233 (Slc11a1-002) 74375203-74386052 retained_intron
ENSMUST00000149166 (Slc11a1-009) 74383341-74384173 processed_transcript
ENSMUST00000155865 (Slc11a1-006) 74376657-74379856 processed_transcript
ENSMUST00000187516 (Slc11a1-011) 74375195-74385755 protein_coding
ENSMUSG00000073650 (Catip)
ciliogenesis associated TTC17 interacting protein 		ENSMUST00000097697 (Catip-001) 74362108-74369321 protein_coding
ENSMUST00000128445 (Catip-002) 74362366-74367798 protein_coding
ENSMUST00000186688 (Catip-004) 74364531-74366742 retained_intron
ENSMUST00000191010 (Catip-003) 74362442-74369150 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00054V_0001ENSG00000018280ENST00000233202ENST00000354352ENST00000460592ENST00000465984ENST00000468221ENST00000468721ENST00000469449ENST00000469799ENST00000471875ENST00000473367ENST00000475225ENST00000481524ENST00000483487ENST00000490536ENST00000490872ENST00000492413ENST00000494322ENST00000539932ENSG00000158428ENST00000289388ENST00000480532ENST00000481940ENST00000494447ENST00000495773ENSG00000225062ENST00000425481ENST00000441749ENSG00000237281ENST00000411433CIL_00054V_0002ENSMUSG00000026177ENSMUST00000027368ENSMUST00000127487ENSMUST00000131511ENSMUST00000133896ENSMUST00000134189ENSMUST00000135137ENSMUST00000136786ENSMUST00000147233ENSMUST00000149166ENSMUST00000155865ENSMUST00000187516ENSMUSG00000073650ENSMUST00000097697ENSMUST00000128445ENSMUST00000186688ENSMUST00000191010
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00054V_0001ENSG00000018280ENST00000233202ENST00000354352ENST00000468221ENST00000469449ENST00000473367ENST00000475225ENST00000483487ENST00000490536ENST00000490872ENST00000494322ENST00000539932ENSG00000158428ENST00000289388ENST00000480532ENST00000481940ENST00000494447ENST00000495773ENSG00000225062ENST00000425481ENST00000441749ENSG00000237281ENST00000411433CIL_00054V_0002ENSMUSG00000026177ENSMUST00000027368ENSMUST00000127487ENSMUST00000131511ENSMUST00000133896ENSMUST00000134189ENSMUST00000136786ENSMUST00000147233ENSMUST00000149166ENSMUST00000187516ENSMUSG00000073650ENSMUST00000097697ENSMUST00000128445ENSMUST00000186688ENSMUST00000191010
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000018280 ENST00000233202 N/A 0.823±0.00 N/A 0.028±0.00 0.266±0.00 0.233±0.20 0.017±0.00 N/A 0.874±0.00 N/A 0.092±0.00 0.426±0.00 N/A 0.517±0.00
ENST00000354352 7.010±0.00 N/A N/A N/A 0.558±0.00 N/A N/A 1.756±0.00 0.641±0.00 15.428±9.37 N/A 1.049±0.00 5.559±2.76 N/A
ENST00000460592 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465984 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468221 N/A 0.456±0.00 N/A 1.601±0.00 0.301±0.00 N/A N/A N/A 0.186±0.00 N/A N/A 0.270±0.11 0.176±0.00 N/A
ENST00000468721 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469449 N/A N/A 0.066±0.00 N/A N/A N/A N/A N/A N/A N/A 0.159±0.00 0.247±0.00 N/A N/A
ENST00000469799 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471875 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473367 N/A N/A N/A 0.048±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475225 N/A 1.306±0.00 N/A N/A N/A 0.133±0.00 N/A N/A 0.241±0.00 N/A N/A N/A N/A 0.299±0.00
ENST00000481524 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483487 N/A N/A N/A N/A N/A N/A 0.128±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000490536 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.525±0.00 N/A N/A
ENST00000490872 N/A N/A N/A N/A N/A 1.384±0.00 N/A N/A 0.760±0.00 N/A N/A N/A N/A N/A
ENST00000492413 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494322 N/A N/A 0.022±0.00 N/A N/A N/A 0.558±0.43 N/A 0.683±0.00 N/A N/A 0.228±0.00 N/A N/A
ENST00000539932 N/A N/A 0.027±0.00 0.078±0.00 N/A N/A N/A N/A N/A N/A 0.153±0.00 N/A N/A N/A
ENSG00000158428 ENST00000289388 N/A N/A N/A N/A N/A 0.059±0.00 N/A N/A 0.112±0.00 1.619±0.00 N/A 2.633±0.00 0.671±0.38 4.523±0.45
ENST00000480532 N/A N/A N/A N/A N/A N/A N/A 0.825±0.00 N/A N/A N/A N/A N/A N/A
ENST00000481940 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.570±0.65 N/A 0.184±0.01 0.555±0.37 N/A
ENST00000494447 0.250±0.00 0.610±0.00 0.408±0.00 0.192±0.00 0.216±0.00 0.045±0.00 0.094±0.00 N/A 0.098±0.00 0.084±0.00 0.014±0.00 0.137±0.09 N/A N/A
ENST00000495773 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.545±0.00 N/A N/A
ENSG00000225062 ENST00000425481 N/A N/A N/A N/A 0.268±0.00 N/A N/A N/A N/A 1.173±0.00 N/A 0.718±0.00 0.235±0.00 N/A
ENST00000441749 0.751±0.00 N/A N/A N/A 0.713±0.00 N/A 0.126±0.00 0.160±0.00 0.784±0.00 N/A N/A 0.808±0.39 0.978±0.03 N/A
ENSG00000237281 ENST00000411433 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.268±0.00 0.499±0.05 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026177 ENSMUST00000027368 5.390±1.00 7.979±1.57 3.117±0.20 0.357±0.13 8.493±2.44 2.502±0.55 0.941±0.39 0.623±0.23 4.310±2.49 3.958±0.61 0.438±0.17 4.174±1.71 0.870±1.06 0.359±0.01
ENSMUST00000127487 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.137±0.06 N/A
ENSMUST00000131511 N/A N/A N/A N/A N/A N/A 0.348±0.00 N/A N/A N/A N/A N/A 0.200±0.00 N/A
ENSMUST00000133896 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.192±0.00
ENSMUST00000134189 18.566±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.828±0.00 N/A 0.471±0.00 N/A
ENSMUST00000135137 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136786 N/A N/A N/A 0.271±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.284±0.00
ENSMUST00000147233 2.965±0.96 N/A 1.163±0.06 N/A 3.474±0.32 1.093±0.20 0.530±0.04 0.442±0.00 1.899±0.59 1.496±0.39 0.107±0.00 1.529±0.48 0.239±0.00 0.321±0.26
ENSMUST00000149166 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.577±0.00
ENSMUST00000155865 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000187516 5.278±0.80 4.653±1.56 N/A 0.314±0.00 7.964±1.90 2.070±0.22 1.137±0.58 1.008±0.33 2.435±0.97 3.026±0.93 0.117±0.00 3.975±1.21 0.033±0.00 0.297±0.05
ENSMUSG00000073650 ENSMUST00000097697 0.467±0.00 0.089±0.03 0.337±0.00 N/A 0.239±0.00 0.261±0.00 0.084±0.03 N/A 0.040±0.00 0.738±0.09 0.104±0.05 0.864±0.29 0.135±0.02 3.748±1.17
ENSMUST00000128445 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.220±0.00 N/A N/A N/A
ENSMUST00000186688 N/A 0.263±0.00 N/A N/A N/A N/A N/A 0.358±0.00 N/A N/A 0.234±0.00 N/A N/A N/A
ENSMUST00000191010 0.430±0.21 0.358±0.14 0.491±0.14 0.365±0.00 0.209±0.09 0.374±0.19 0.294±0.07 0.177±0.07 0.043±0.03 1.213±0.49 0.102±0.07 2.189±1.68 0.111±0.06 4.388±1.79

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