C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: potassium large conductance calcium-activated channel, subfamily M, alpha member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000354353 KCNMA1-201 ENSG00000156113 9606 - 10:76884878-77404025 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonHeartLiverMuscleOvaryTestisENST00000354353
Transcript ID Breast Colon Heart Liver Muscle Ovary Testis
ENST00000354353 3.299±0.00 8.213±0.00 0.157±0.00 0.903±0.00 2.793±1.60 0.964±0.48 3.385±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007JX CIL_0007JX_0001 UCNEbase 10:74418410-76978156
CIL_0005E6 CIL_0005E6_0001 CGP 10:75431453-77638595
CIL_0008QZ CIL_0008QZ_0001 VISTA 10:76330832-76932117
CIL_0008KV CIL_0008KV_0001 VISTA 10:76764029-77364632
CIL_0008L3 CIL_0008L3_0001 VISTA 10:76772404-77373369
CIL_00087A CIL_00087A_0001 VISTA 10:76800721-77402185
CIL_0004CA CIL_0004CA_0001 CGP 10:76869601-77926526

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005216 IEA ion channel activity
GO:0006811 IEA ion transport
GO:0006813 IEA potassium ion transport
GO:0015269 IEA calcium-activated potassium channel activity
GO:0016020 IEA membrane
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000190985 Kcnma1-004 nonsense_mediated_decay Mus_musculus 0 2597
ENSMUST00000179097 Kcnma1-208 protein_coding Mus_musculus 0 2593
ENSMUST00000177634 Kcnma1-207 protein_coding Mus_musculus 0 2593
ENSMUST00000065788 Kcnma1-201 protein_coding Mus_musculus 0 2593
ENSMUST00000188991 Kcnma1-006 protein_coding Mus_musculus 0 2593
ENSMUST00000190044 Kcnma1-005 protein_coding Mus_musculus 0 2593
ENSMUST00000172099 Kcnma1-206 protein_coding Mus_musculus 0 2543
ENSMUST00000100831 Kcnma1-203 protein_coding Mus_musculus 0 2543
ENSMUST00000074983 Kcnma1-202 protein_coding Mus_musculus 0 2543
ENSMUST00000188210 Kcnma1-001 protein_coding Mus_musculus 0 2538
ENSMUST00000188285 Kcnma1-003 protein_coding Mus_musculus 0 2538
ENSMUST00000163322 Kcnma1-205 protein_coding Mus_musculus 0 2405
ENSMUST00000112423 Kcnma1-204 protein_coding Mus_musculus 0 2359
ENSMUST00000179836 Kcnma1-209 protein_coding Mus_musculus 0 2010
ENSDART00000122557 kcnma1a-201 protein_coding Danio_rerio 0 1533
ENSDART00000143200 kcnma1a-001 protein_coding Danio_rerio 0 1533
ENSDART00000082500 kcnma1b-201 protein_coding Danio_rerio 0 560

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