C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000357517 PCDH1-005 ENSG00000156453 9606 - 5:141863057-141869589 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverMuscleOvaryENST00000357517
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary
ENST00000357517 1.018±0.00 1.390±0.00 4.065±0.00 3.790±0.00 0.636±0.00 5.249±0.00 1.635±0.00 1.145±0.00 1.406±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006QH CIL_0006QH_0001 CGP 5:141653401-141879246
CIL_0006QI CIL_0006QI_0001 CGP 5:141853111-141942047

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000159405 Pcdh1-005 protein_coding Mus_musculus 0 3886
ENSMUST00000057185 Pcdh1-001 protein_coding Mus_musculus 0 3886
ENSMUST00000161701 Pcdh1-002 protein_coding Mus_musculus 0 3247
ENSMUST00000160721 Pcdh1-004 protein_coding Mus_musculus 0 1020

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