C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calcium channel, voltage-dependent, T type, alpha 1H subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000358590 CACNA1H-201 ENSG00000196557 9606 + 16:1153241-1221771 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonKidneyLungMusclePlacentaENST00000358590
Transcript ID Colon Kidney Lung Muscle Placenta
ENST00000358590 0.628±0.00 1.324±0.00 1.817±0.00 0.619±0.00 1.276±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005216 IEA ion channel activity
GO:0005886 IBA plasma membrane
GO:0005891 IEA voltage-gated calcium channel complex
GO:0006810 TAS transport
GO:0006811 IEA ion transport
GO:0006936 TAS muscle contraction
GO:0007411 TAS axon guidance
GO:0007517 NAS muscle organ development
GO:0007520 TAS myoblast fusion
GO:0008016 TAS regulation of heart contraction
GO:0008332 IDA low voltage-gated calcium channel activity
GO:0016020 IEA membrane
GO:0016021 IDA integral component of membrane
GO:0032342 IMP aldosterone biosynthetic process
GO:0032870 IEP cellular response to hormone stimulus
GO:0034651 IMP cortisol biosynthetic process
GO:0034765 IEA regulation of ion transmembrane transport
GO:0035865 IEP cellular response to potassium ion
GO:0042391 IDA regulation of membrane potential
GO:0046872 IEA metal ion binding
GO:0055085 IEA transmembrane transport
GO:0070509 IDA calcium ion import
GO:0070588 IEA calcium ion transmembrane transport
GO:0086010 IBA membrane depolarization during action potential
GO:0097110 IPI scaffold protein binding
GO:2000344 IMP positive regulation of acrosome reaction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000078496 Cacna1h-201 protein_coding Mus_musculus 0 3437
ENSMUST00000159048 Cacna1h-002 protein_coding Mus_musculus 0 3437
ENSMUST00000159610 Cacna1h-001 protein_coding Mus_musculus 0 3437
ENSMUST00000161454 Cacna1h-004 retained_intron Mus_musculus 0 1836
ENSMUST00000162155 Cacna1i-002 nonsense_mediated_decay Mus_musculus 0 1459
ENSMUST00000160424 Cacna1i-001 protein_coding Mus_musculus 0 1459
ENSMUST00000107788 Cacna1g-009 protein_coding Mus_musculus 0 1269
ENSMUST00000107792 Cacna1g-004 protein_coding Mus_musculus 0 1269
ENSMUST00000107785 Cacna1g-006 protein_coding Mus_musculus 0 1212
ENSMUST00000107793 Cacna1g-008 protein_coding Mus_musculus 0 1212
ENSMUST00000107791 Cacna1g-002 protein_coding Mus_musculus 0 1212
ENSDART00000151012 si:ch73-379f7.5-001 protein_coding Danio_rerio 0 915
ENSDART00000145615 cacna1i-001 protein_coding Danio_rerio 0 874
ENSDART00000154869 cacna1ha-001 protein_coding Danio_rerio 0 673
ENSDART00000085210 cacna1ha-201 protein_coding Danio_rerio 0 671
ENSMUST00000021234 Cacna1g-201 protein_coding Mus_musculus 0 664
ENSMUST00000107790 Cacna1g-010 protein_coding Mus_musculus 0 664
ENSMUST00000107786 Cacna1g-001 protein_coding Mus_musculus 0 664
ENSMUST00000152811 Cacna1g-007 processed_transcript Mus_musculus 0 652
ENSMUST00000107789 Cacna1g-011 protein_coding Mus_musculus 0 652
ENSMUST00000100561 Cacna1g-005 protein_coding Mus_musculus 0 652
ENSMUST00000103166 Cacna1g-003 protein_coding Mus_musculus 0 652
ENSDART00000085216 cacna1i-201 protein_coding Danio_rerio 0 610
ENSMUST00000161035 Cacna1h-008 protein_coding Mus_musculus 0 484
ENSMUST00000159331 Cacna1h-010 retained_intron Mus_musculus 0 416
ENSMUST00000162820 Cacna1h-007 retained_intron Mus_musculus 0 387
ENSMUST00000161658 Cacna1h-009 nonsense_mediated_decay Mus_musculus 0 285
ENSMUST00000024999 Tpsg1-001 protein_coding Mus_musculus 0.0000000004 73
ENSMUST00000162021 Tpsg1-004 protein_coding Mus_musculus 0.0000000004 73
ENSMUST00000160377 Tpsg1-002 protein_coding Mus_musculus 0.0000000004 73

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