C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calcium channel, voltage-dependent, alpha 1I subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000160424 Cacna1i-001 ENSMUSG00000022416 10090 + 15:80287238-80398279 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000160424
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000160424 0.018±0.01 0.040±0.01 0.006±0.00 0.705±0.05 0.878±0.00 0.043±0.03 0.042±0.01 0.010±0.01 0.038±0.02 0.050±0.03 0.026±0.02 0.145±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005W8 CIL_0005W8_0002 CGP 15:80260614-80398279
CIL_0005W5 CIL_0005W5_0002 CGP 15:80287238-80560470

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005245 IBA voltage-gated calcium channel activity
GO:0005515 IEA protein binding
GO:0005886 IBA plasma membrane
GO:0005891 IEA voltage-gated calcium channel complex
GO:0019228 IMP neuronal action potential
GO:0030431 IMP sleep
GO:0034765 IEA regulation of ion transmembrane transport
GO:0070509 IBA calcium ion import
GO:0070588 IEA calcium ion transmembrane transport
GO:0086010 IBA membrane depolarization during action potential

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000145615 cacna1i-001 protein_coding Danio_rerio 0 1428
ENSDART00000151012 si:ch73-379f7.5-001 protein_coding Danio_rerio 0 1027
ENSDART00000085216 cacna1i-201 protein_coding Danio_rerio 0 987
ENSDART00000154869 cacna1ha-001 protein_coding Danio_rerio 0 658
ENSDART00000085210 cacna1ha-201 protein_coding Danio_rerio 0 656
ENSDART00000103611 cacna1hb-201 protein_coding Danio_rerio 0 440
ENSDART00000141604 cacna1hb-001 protein_coding Danio_rerio 0 427
ENST00000348261 CACNA1H-001 protein_coding Homo_sapiens 0 1387
ENST00000352832 CACNA1G-001 protein_coding Homo_sapiens 0 1110
ENST00000354983 CACNA1G-201 protein_coding Homo_sapiens 0 1110
ENST00000358244 CACNA1G-027 protein_coding Homo_sapiens 0 1110
ENST00000358590 CACNA1H-201 protein_coding Homo_sapiens 0 1459
ENST00000359106 CACNA1G-013 protein_coding Homo_sapiens 0 617
ENST00000360761 CACNA1G-008 protein_coding Homo_sapiens 0 621
ENST00000401624 CACNA1I-003 protein_coding Homo_sapiens 0 4492
ENST00000402142 CACNA1I-001 protein_coding Homo_sapiens 0 4492
ENST00000404898 CACNA1I-002 protein_coding Homo_sapiens 0 6357
ENST00000407673 CACNA1I-004 protein_coding Homo_sapiens 0 6357
ENST00000416767 CACNA1G-023 protein_coding Homo_sapiens 0 614
ENST00000429973 CACNA1G-007 protein_coding Homo_sapiens 0 1151
ENST00000442258 CACNA1G-019 protein_coding Homo_sapiens 0 1151
ENST00000471970 CACNA1I-005 processed_transcript Homo_sapiens 3e-35 150
ENST00000502264 CACNA1G-031 protein_coding Homo_sapiens 0 621
ENST00000503436 CACNA1G-017 nonsense_mediated_decay Homo_sapiens 0 621
ENST00000503485 CACNA1G-005 protein_coding Homo_sapiens 0 614
ENST00000503607 CACNA1G-033 nonsense_mediated_decay Homo_sapiens 0 883
ENST00000504076 CACNA1G-014 nonsense_mediated_decay Homo_sapiens 0 841
ENST00000505165 CACNA1G-032 protein_coding Homo_sapiens 0 617
ENST00000506406 CACNA1G-012 nonsense_mediated_decay Homo_sapiens 0 617
ENST00000507336 CACNA1G-011 protein_coding Homo_sapiens 0 1110
ENST00000507510 CACNA1G-009 protein_coding Homo_sapiens 0 617
ENST00000507609 CACNA1G-016 protein_coding Homo_sapiens 0 617
ENST00000507896 CACNA1G-028 protein_coding Homo_sapiens 0 1110
ENST00000510115 CACNA1G-018 protein_coding Homo_sapiens 0 1110
ENST00000510366 CACNA1G-004 protein_coding Homo_sapiens 0 614
ENST00000511765 CACNA1G-010 nonsense_mediated_decay Homo_sapiens 0 883
ENST00000511768 CACNA1G-030 nonsense_mediated_decay Homo_sapiens 0 621
ENST00000512389 CACNA1G-024 protein_coding Homo_sapiens 0 1110
ENST00000513689 CACNA1G-015 protein_coding Homo_sapiens 0 614
ENST00000513964 CACNA1G-002 protein_coding Homo_sapiens 0 614
ENST00000514079 CACNA1G-026 protein_coding Homo_sapiens 0 617
ENST00000514181 CACNA1G-021 protein_coding Homo_sapiens 0 1044
ENST00000514717 CACNA1G-003 protein_coding Homo_sapiens 0 621
ENST00000515165 CACNA1G-020 protein_coding Homo_sapiens 0 617
ENST00000515411 CACNA1G-034 protein_coding Homo_sapiens 0 1151
ENST00000515765 CACNA1G-025 protein_coding Homo_sapiens 0 1110
ENST00000562079 CACNA1H-005 protein_coding Homo_sapiens 0 1459
ENST00000564231 CACNA1H-003 protein_coding Homo_sapiens 0 1387
ENST00000564927 CACNA1H-006 protein_coding Homo_sapiens 0 1122
ENST00000565831 CACNA1H-002 protein_coding Homo_sapiens 0 1459
ENST00000569107 CACNA1H-004 protein_coding Homo_sapiens 0 721
ENST00000569953 CACNA1H-008 retained_intron Homo_sapiens 0 339
ENST00000570567 CACNA1G-035 protein_coding Homo_sapiens 0 211

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