C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calcium channel, voltage-dependent, T type, alpha 1H subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000159610 Cacna1h-001 ENSMUSG00000024112 10090 - 17:25374285-25433783 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000159610
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000159610 1.149±1.15 21.206±3.97 6.950±2.77 5.239±0.29 0.252±0.00 8.113±0.90 3.031±0.24 0.023±0.00 0.140±0.13 0.272±0.05 0.247±0.03 6.947±2.37 0.183±0.23 26.089±0.67

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005891 ISS voltage-gated calcium channel complex
GO:0005901 IDA caveola
GO:0008332 IBA low voltage-gated calcium channel activity
GO:0034765 IEA regulation of ion transmembrane transport
GO:0042383 IDA sarcolemma
GO:0045956 IBA positive regulation of calcium ion-dependent exocytosis
GO:0070509 IBA calcium ion import
GO:0070588 IEA calcium ion transmembrane transport
GO:0086010 IBA membrane depolarization during action potential

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000141604 cacna1hb-001 protein_coding Danio_rerio 0 957
ENSDART00000103611 cacna1hb-201 protein_coding Danio_rerio 0 937
ENSDART00000151012 si:ch73-379f7.5-001 protein_coding Danio_rerio 0 907
ENSDART00000085216 cacna1i-201 protein_coding Danio_rerio 0 529
ENSDART00000145615 cacna1i-001 protein_coding Danio_rerio 0 529
ENSDART00000123534 cacna1g-201 protein_coding Danio_rerio 0 300
ENSDART00000153256 cacna1g-001 protein_coding Danio_rerio 0 300
ENSDART00000085210 cacna1ha-201 protein_coding Danio_rerio 0 287
ENSDART00000154869 cacna1ha-001 protein_coding Danio_rerio 0 287
ENST00000234798 TPSG1-001 protein_coding Homo_sapiens 0.00000000005 73
ENST00000348261 CACNA1H-001 protein_coding Homo_sapiens 0 3437
ENST00000352832 CACNA1G-001 protein_coding Homo_sapiens 0 1116
ENST00000354983 CACNA1G-201 protein_coding Homo_sapiens 0 1116
ENST00000358244 CACNA1G-027 protein_coding Homo_sapiens 0 1116
ENST00000358590 CACNA1H-201 protein_coding Homo_sapiens 0 3437
ENST00000359106 CACNA1G-013 protein_coding Homo_sapiens 0 586
ENST00000360761 CACNA1G-008 protein_coding Homo_sapiens 0 592
ENST00000401624 CACNA1I-003 protein_coding Homo_sapiens 0 1456
ENST00000402142 CACNA1I-001 protein_coding Homo_sapiens 0 1456
ENST00000404898 CACNA1I-002 protein_coding Homo_sapiens 0 1456
ENST00000407673 CACNA1I-004 protein_coding Homo_sapiens 0 1456
ENST00000416767 CACNA1G-023 protein_coding Homo_sapiens 0 580
ENST00000429973 CACNA1G-007 protein_coding Homo_sapiens 0 1179
ENST00000442258 CACNA1G-019 protein_coding Homo_sapiens 0 1179
ENST00000502264 CACNA1G-031 protein_coding Homo_sapiens 0 592
ENST00000503436 CACNA1G-017 nonsense_mediated_decay Homo_sapiens 0 592
ENST00000503485 CACNA1G-005 protein_coding Homo_sapiens 0 586
ENST00000503607 CACNA1G-033 nonsense_mediated_decay Homo_sapiens 0 935
ENST00000504076 CACNA1G-014 nonsense_mediated_decay Homo_sapiens 0 870
ENST00000505165 CACNA1G-032 protein_coding Homo_sapiens 0 586
ENST00000506406 CACNA1G-012 nonsense_mediated_decay Homo_sapiens 0 580
ENST00000507336 CACNA1G-011 protein_coding Homo_sapiens 0 1116
ENST00000507510 CACNA1G-009 protein_coding Homo_sapiens 0 586
ENST00000507609 CACNA1G-016 protein_coding Homo_sapiens 0 580
ENST00000507896 CACNA1G-028 protein_coding Homo_sapiens 0 1116
ENST00000510115 CACNA1G-018 protein_coding Homo_sapiens 0 1116
ENST00000510366 CACNA1G-004 protein_coding Homo_sapiens 0 651
ENST00000511765 CACNA1G-010 nonsense_mediated_decay Homo_sapiens 0 935
ENST00000511768 CACNA1G-030 nonsense_mediated_decay Homo_sapiens 0 592
ENST00000512389 CACNA1G-024 protein_coding Homo_sapiens 0 1116
ENST00000513689 CACNA1G-015 protein_coding Homo_sapiens 0 588
ENST00000513964 CACNA1G-002 protein_coding Homo_sapiens 0 588
ENST00000514079 CACNA1G-026 protein_coding Homo_sapiens 0 586
ENST00000514181 CACNA1G-021 protein_coding Homo_sapiens 0 1083
ENST00000514717 CACNA1G-003 protein_coding Homo_sapiens 0 592
ENST00000515165 CACNA1G-020 protein_coding Homo_sapiens 0 586
ENST00000515411 CACNA1G-034 protein_coding Homo_sapiens 0 1179
ENST00000515765 CACNA1G-025 protein_coding Homo_sapiens 0 1116
ENST00000562079 CACNA1H-005 protein_coding Homo_sapiens 0 2852
ENST00000564231 CACNA1H-003 protein_coding Homo_sapiens 0 2769
ENST00000564927 CACNA1H-006 protein_coding Homo_sapiens 0 2172
ENST00000564954 CACNA1H-007 retained_intron Homo_sapiens 0 545
ENST00000565831 CACNA1H-002 protein_coding Homo_sapiens 0 3352
ENST00000569107 CACNA1H-004 protein_coding Homo_sapiens 0 1602
ENST00000569953 CACNA1H-008 retained_intron Homo_sapiens 0 726
ENST00000570567 CACNA1G-035 protein_coding Homo_sapiens 0 353

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