C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NLR family, CARD domain containing 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000359128 NLRC3-001 ENSG00000167984 9606 - 16:3539033-3577391 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastLungENST00000359128
Transcript ID Breast Lung
ENST00000359128 1.676±0.00 2.574±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005EX CIL_0005EX_0001 CGP 16:3493484-3539048
CIL_0001DL CIL_0001DL_0001 CGP 16:3500924-3577400
CIL_0000AZ CIL_0000AZ_0001 CGP 16:3539033-3611598

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005737 IDA cytoplasm
GO:0007249 IDA I-kappaB kinase/NF-kappaB signaling
GO:0031396 IEA regulation of protein ubiquitination
GO:0032088 IDA negative regulation of NF-kappaB transcription factor activity
GO:0032496 IEA response to lipopolysaccharide
GO:0042110 IEP T cell activation
GO:0043124 IMP negative regulation of I-kappaB kinase/NF-kappaB signaling

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000177551 Nlrc3-004 protein_coding Mus_musculus 0 2621
ENSMUST00000096308 Nlrc3-002 retained_intron Mus_musculus 0 1467
ENSMUST00000180200 Nlrc3-001 protein_coding Mus_musculus 0 1029
ENSMUST00000163478 Nlrc3-003 retained_intron Mus_musculus 0 874
ENSMUST00000147797 Nol9-003 processed_transcript Mus_musculus 0.00000001 68

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