C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CDK5 regulatory subunit associated protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000360190 CDK5RAP2-014 ENSG00000136861 9606 - 9:120388876-120580158 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartLiverOvaryPlacentaTestisENST00000360190
Transcript ID Bladder Brain Breast Colon Heart Liver Ovary Placenta Testis
ENST00000360190 0.839±0.00 0.299±0.00 1.923±0.00 2.811±0.44 1.178±0.62 0.775±0.00 4.157±0.62 2.435±0.00 4.749±1.90

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004FK CIL_0004FK_0001 CGP 9:119153458-120580170
CIL_0004FL CIL_0004FL_0001 CGP 9:120388869-120714470

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000086 TAS G2/M transition of mitotic cell cycle
GO:0000132 ISS establishment of mitotic spindle orientation
GO:0000226 IDA microtubule cytoskeleton organization
GO:0000242 IDA pericentriolar material
GO:0000278 TAS mitotic cell cycle
GO:0000922 IDA spindle pole
GO:0001578 IDA microtubule bundle formation
GO:0005515 IPI protein binding
GO:0005516 IPI calmodulin binding
GO:0005737 IDA cytoplasm
GO:0005794 IDA Golgi apparatus
GO:0005813 IDA centrosome
GO:0005829 TAS cytosol
GO:0005856 NAS cytoskeleton
GO:0005874 IDA microtubule
GO:0007059 IMP chromosome segregation
GO:0007420 ISS brain development
GO:0008017 IDA microtubule binding
GO:0015631 IPI tubulin binding
GO:0019901 IPI protein kinase binding
GO:0022008 ISS neurogenesis
GO:0030054 IDA cell junction
GO:0044212 IDA transcription regulatory region DNA binding
GO:0045664 NAS regulation of neuron differentiation
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0046600 ISS negative regulation of centriole replication
GO:0048471 IDA perinuclear region of cytoplasm
GO:0051297 IMP centrosome organization
GO:0070062 IDA extracellular vesicular exosome
GO:0090231 IDA regulation of spindle checkpoint

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000144099 Cdk5rap2-001 protein_coding Mus_musculus 0 2045
ENSMUST00000076541 Cdk5rap2-003 nonsense_mediated_decay Mus_musculus 0 1973
ENSMUST00000138561 Cdk5rap2-006 protein_coding Mus_musculus 0 464
ENSMUST00000140108 Cdk5rap2-002 protein_coding Mus_musculus 0 209

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