C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S24
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000360830 RPS24-003 ENSG00000138326 9606 + 10:78033883-78040697 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000360830
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000360830 420.235±0.00 511.409±0.00 13.050±0.00 148.085±32.12 272.893±86.57 293.323±234.77 77.663±60.14 128.050±58.52 143.776±34.22 398.325±309.37 69.650±49.76 1156.288±899.87 723.173±67.90 410.152±58.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008A5 CIL_0008A5_0001 VISTA 10:77875813-78480338
CIL_00084G CIL_00084G_0001 VISTA 10:77912633-78517575
CIL_000809 CIL_000809_0001 VISTA 10:77918028-78521061
CIL_0007IB CIL_0007IB_0001 CGP 10:77969251-78056812
CIL_0007AW CIL_0007AW_0002 CGP 10:78033760-79316528

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000462 IBA maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0003735 NAS:IEA structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005730 IBA nucleolus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0006364 IMP rRNA processing
GO:0006412 IC:IEA translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0015935 ISS small ribosomal subunit
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022627 IDA cytosolic small ribosomal subunit
GO:0031369 ISS translation initiation factor binding
GO:0034101 IMP erythrocyte homeostasis
GO:0042274 IMP ribosomal small subunit biogenesis
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000112384 Rps24-201 protein_coding Mus_musculus 0 516
ENSMUST00000169826 Rps24-202 protein_coding Mus_musculus 0 510
ENSMUST00000118723 Rps24-ps3-001 processed_pseudogene Mus_musculus 0 499
ENSMUST00000162574 AC122223.2-001 processed_pseudogene Mus_musculus 0 486
ENSMUST00000078768 Gm6030-201 processed_pseudogene Mus_musculus 0 466
ENSMUST00000117908 Gm11878-001 processed_pseudogene Mus_musculus 0 453
ENSMUST00000119883 Gm7363-001 processed_pseudogene Mus_musculus 0 436
ENSMUST00000091375 Rps24-ps2-201 processed_pseudogene Mus_musculus 0 405
ENSMUST00000119769 Gm12739-001 processed_pseudogene Mus_musculus 0 361
ENSDART00000143934 rps24-003 retained_intron Danio_rerio 0 294
ENSDART00000100813 rps24-002 protein_coding Danio_rerio 0 294
ENSDART00000147729 rps24-001 protein_coding Danio_rerio 0 294
ENSDART00000141945 rps24-006 protein_coding Danio_rerio 0 287
ENSDART00000133404 rps24-005 protein_coding Danio_rerio 0 287

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