C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L39
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000361575 RPL39-001 ENSG00000198918 9606 - X:119786506-119791643 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000361575
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000361575 545.105±0.00 945.109±0.00 55.116±0.00 87.263±8.67 289.331±95.56 361.758±177.77 172.187±101.12 164.850±10.13 312.156±134.04 509.922±361.91 348.703±184.13 981.414±670.53 853.658±402.22 196.280±94.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000176 CIL_000176_0002 CGP X:119758613-119791643
CIL_000175 CIL_000175_0002 CGP X:119786504-119852998

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0002227 IDA innate immune response in mucosa
GO:0003723 TAS RNA binding
GO:0003735 NAS:IEA structural constituent of ribosome
GO:0005615 IDA extracellular space
GO:0005622 IEA intracellular
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0006412 NAS:IEA translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0019731 IDA antibacterial humoral response
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0044267 TAS cellular protein metabolic process
GO:0050830 IDA defense response to Gram-positive bacterium

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000142604 Rpl39-ps-002 processed_transcript Mus_musculus 0 244
ENSMUST00000115231 Rpl39-001 protein_coding Mus_musculus 0 244
ENSMUST00000121292 Rpl39l-002 protein_coding Mus_musculus 0 228
ENSMUST00000044103 Rpl39l-001 protein_coding Mus_musculus 0 228
ENSMUST00000146505 Rpl39-ps-001 transcribed_processed_pseudogene Mus_musculus 0 196
ENSMUST00000117602 Gm15148-001 processed_pseudogene Mus_musculus 0 191
ENSMUST00000121971 Gm12013-001 processed_pseudogene Mus_musculus 0 187
ENSMUST00000138799 Rpl39-002 retained_intron Mus_musculus 1.4013e-45 185
ENSMUST00000191066 RP23-127L14.1-001 processed_pseudogene Mus_musculus 9.94922e-44 180
ENSMUST00000118985 Gm14541-001 processed_pseudogene Mus_musculus 3.9937e-43 178
ENSMUST00000118637 Gm11694-001 processed_pseudogene Mus_musculus 2e-40 169
ENSMUST00000121969 Gm11334-001 processed_pseudogene Mus_musculus 8e-40 167
ENSMUST00000119534 Gm15067-001 processed_pseudogene Mus_musculus 8e-40 167

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