C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger E-box binding homeobox 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000361642 ZEB1-201 ENSG00000148516 9606 + 10:31319172-31529813 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeKidneyOvaryPlacentaENST00000361642
Transcript ID Adipose Kidney Ovary Placenta
ENST00000361642 2.843±0.00 0.799±0.00 1.314±0.11 1.191±0.48

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000R6 CIL_0000R6_0001 CGP 10:30820207-31529814
CIL_0000R1 CIL_0000R1_0001 CGP 10:31318495-31928876

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0003690 IEA double-stranded DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003713 TAS transcription coactivator activity
GO:0003714 TAS transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 IEA transcription factor complex
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0006955 TAS immune response
GO:0007389 IEA pattern specification process
GO:0007417 IEA central nervous system development
GO:0008134 IEA transcription factor binding
GO:0008270 TAS zinc ion binding
GO:0008283 TAS cell proliferation
GO:0008285 IEA negative regulation of cell proliferation
GO:0010464 IEA regulation of mesenchymal cell proliferation
GO:0014823 IEA response to activity
GO:0017015 IEA regulation of transforming growth factor beta receptor signaling pathway
GO:0030857 IEA negative regulation of epithelial cell differentiation
GO:0030900 IEA forebrain development
GO:0031667 IEA response to nutrient levels
GO:0033081 IEA regulation of T cell differentiation in thymus
GO:0045666 ISS positive regulation of neuron differentiation
GO:0045892 IMP negative regulation of transcription, DNA-templated
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding
GO:0048513 IEA organ development
GO:0048596 IEA embryonic camera-type eye morphogenesis
GO:0048598 IEA embryonic morphogenesis
GO:0048704 IEA embryonic skeletal system morphogenesis
GO:0048752 IEA semicircular canal morphogenesis
GO:0051150 IEA regulation of smooth muscle cell differentiation
GO:0051216 IEA cartilage development
GO:0070888 ISS E-box binding
GO:0071230 IEA cellular response to amino acid stimulus
GO:0071560 IEA cellular response to transforming growth factor beta stimulus
GO:0090103 IEA cochlea morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000025081 Zeb1-001 protein_coding Mus_musculus 0 3155
ENSMUST00000177030 Zeb1-003 processed_transcript Mus_musculus 0 2303
ENSMUST00000162892 Zeb1-009 retained_intron Mus_musculus 0 2132
ENSMUST00000175925 Zeb1-010 nonsense_mediated_decay Mus_musculus 0 1777
ENSMUST00000161295 Zeb1-007 nonsense_mediated_decay Mus_musculus 0 1016
ENSMUST00000159390 Zeb1-008 protein_coding Mus_musculus 0 802
ENSMUST00000177070 Zeb1-011 processed_transcript Mus_musculus 0 606
ENSMUST00000160522 Zeb1-002 retained_intron Mus_musculus 0 403
ENSMUST00000160910 Zeb1-006 protein_coding Mus_musculus 0 292
ENSDART00000047724 zeb1b-001 protein_coding Danio_rerio 6e-37 161
ENSDART00000146493 zeb1a-001 protein_coding Danio_rerio 0.00000000002 77
ENSDART00000136077 zeb1a-003 protein_coding Danio_rerio 0.0000007 62

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