C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000R1_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000148516-ENSG00000165322 CGP 9606 10:31318495-31928876
GeneTranscriptPositionBiotype
ENSG00000148516 (ZEB1)
zinc finger E-box binding homeobox 1 		ENST00000320985 (ZEB1-018) 31319125-31529202 protein_coding
ENST00000361642 (ZEB1-201) 31319172-31529813 protein_coding
ENST00000424869 (ZEB1-004) 31319216-31520200 protein_coding
ENST00000437844 (ZEB1-001) 31319216-31529814 nonsense_mediated_decay
ENST00000446923 (ZEB1-202) 31321135-31529813 protein_coding
ENST00000488625 (ZEB1-005) 31318495-31529202 retained_intron
ENST00000493835 (ZEB1-006) 31355144-31461236 processed_transcript
ENST00000542815 (ZEB1-016) 31319222-31527294 protein_coding
ENST00000542879 (ZEB1-017) 31318818-31527276 retained_intron
ENST00000557827 (ZEB1-013) 31321474-31514651 retained_intron
ENST00000558440 (ZEB1-003) 31319213-31520421 protein_coding
ENST00000558655 (ZEB1-009) 31320547-31524007 retained_intron
ENST00000558832 (ZEB1-021) 31322010-31358590 processed_transcript
ENST00000558863 (ZEB1-019) 31320113-31520811 retained_intron
ENST00000559476 (ZEB1-012) 31321152-31520214 protein_coding
ENST00000559496 (ZEB1-011) 31321135-31514657 retained_intron
ENST00000559858 (ZEB1-015) 31319212-31524007 processed_transcript
ENST00000560196 (ZEB1-007) 31318783-31502447 retained_intron
ENST00000560721 (ZEB1-002) 31319212-31527294 protein_coding
ENST00000560909 (ZEB1-023) 31381723-31461180 retained_intron
ENST00000561061 (ZEB1-010) 31320606-31514707 processed_transcript
ENST00000561212 (ZEB1-020) 31320126-31520811 protein_coding
ENST00000561304 (ZEB1-008) 31318837-31514681 retained_intron
ENST00000606161 (ZEB1-022) 31321690-31502406 processed_transcript
ENST00000606671 (ZEB1-024) 31321621-31502423 processed_transcript
ENSG00000165322 (ARHGAP12)
Rho GTPase activating protein 12 		ENST00000311380 (ARHGAP12-001) 31805437-31908874 protein_coding
ENST00000344936 (ARHGAP12-009) 31806306-31928807 protein_coding
ENST00000375245 (ARHGAP12-201) 31805404-31928876 protein_coding
ENST00000375250 (ARHGAP12-008) 31805437-31928814 protein_coding
ENST00000396144 (ARHGAP12-202) 31805404-31928876 protein_coding
ENST00000454919 (ARHGAP12-005) 31820444-31854180 protein_coding
ENST00000492028 (ARHGAP12-002) 31805714-31826974 processed_transcript
ENST00000493008 (ARHGAP12-003) 31806294-31809685 processed_transcript
ENST00000497085 (ARHGAP12-004) 31806291-31808551 processed_transcript
ENST00000497103 (ARHGAP12-006) 31812636-31843556 processed_transcript
ENSG00000223834 (RP11-472N13.2)
 ENST00000420945 (RP11-472N13.2-001) 31604600-31606218 lincRNA
ENSG00000230397 (SPTLC1P1)
serine palmitoyltransferase, long chain base subunit 1 pseudogene 1 		ENST00000447199 (SPTLC1P1-001) 31360955-31361215 transcribed_processed_pseudogene
ENSG00000231148 (HMGB1P7)
high mobility group box 1 pseudogene 7 		ENST00000450921 (HMGB1P7-001) 31913143-31913754 processed_pseudogene
ENSG00000237797 (RP11-472N13.3)
 ENST00000433770 (RP11-472N13.3-001) 31693084-31707388 lincRNA
CIL_0000R1_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000024238-ENSMUSG00000041225 CGP 10090 18:5591860-6136098
GeneTranscriptPositionBiotype
ENSMUSG00000024238 (Zeb1)
zinc finger E-box binding homeobox 1 		ENSMUST00000025081 (Zeb1-001) 5591860-5775467 protein_coding
ENSMUST00000159390 (Zeb1-008) 5591891-5766533 protein_coding
ENSMUST00000159477 (Zeb1-005) 5603744-5642873 processed_transcript
ENSMUST00000160522 (Zeb1-002) 5591872-5706884 retained_intron
ENSMUST00000160910 (Zeb1-006) 5593602-5759057 protein_coding
ENSMUST00000161295 (Zeb1-007) 5591912-5766570 nonsense_mediated_decay
ENSMUST00000162892 (Zeb1-009) 5594203-5767742 retained_intron
ENSMUST00000175739 (Zeb1-004) 5593308-5641459 processed_transcript
ENSMUST00000175925 (Zeb1-010) 5591891-5766916 nonsense_mediated_decay
ENSMUST00000177030 (Zeb1-003) 5731081-5772804 processed_transcript
ENSMUST00000177070 (Zeb1-011) 5593861-5759184 processed_transcript
ENSMUSG00000041225 (Arhgap12)
Rho GTPase activating protein 12 		ENSMUST00000062584 (Arhgap12-007) 6026432-6135892 protein_coding
ENSMUST00000077128 (Arhgap12-002) 6024785-6135907 protein_coding
ENSMUST00000181989 (Arhgap12-011) 6064359-6135941 processed_transcript
ENSMUST00000182038 (Arhgap12-003) 6061951-6135955 protein_coding
ENSMUST00000182066 (Arhgap12-008) 6024427-6112363 protein_coding
ENSMUST00000182101 (Arhgap12-014) 6039406-6092857 processed_transcript
ENSMUST00000182178 (Arhgap12-012) 6065730-6135935 processed_transcript
ENSMUST00000182213 (Arhgap12-006) 6025197-6135960 protein_coding
ENSMUST00000182322 (Arhgap12-015) 6061847-6069940 processed_transcript
ENSMUST00000182343 (Arhgap12-016) 6032960-6034707 retained_intron
ENSMUST00000182383 (Arhgap12-005) 6026556-6135888 protein_coding
ENSMUST00000182559 (Arhgap12-001) 6025217-6136098 protein_coding
ENSMUST00000182572 (Arhgap12-004) 6068654-6071097 retained_intron
ENSMUST00000182614 (Arhgap12-010) 6057559-6135970 processed_transcript
ENSMUST00000182921 (Arhgap12-013) 6049278-6111980 protein_coding
ENSMUSG00000063087 (Gm10125)
predicted gene 10125 		ENSMUST00000074702 (Gm10125-001) 5565650-5592382 antisense
ENSMUST00000160925 (Gm10125-005) 5525365-5592191 antisense
ENSMUST00000161096 (Gm10125-003) 5565650-5593505 antisense
ENSMUST00000161383 (Gm10125-004) 5574985-5592190 antisense
ENSMUST00000161921 (Gm10125-002) 5491503-5592393 antisense
ENSMUST00000177190 (Gm10125-006) 5518415-5521109 retained_intron
ENSMUST00000178464 (Gm10125-201) 5525293-5592393 processed_transcript
ENSMUSG00000090078 (Gm16147)
predicted gene 16147 		ENSMUST00000162143 (Gm16147-001) 5611558-5611930 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000R1_0001ENSG00000148516ENST00000320985ENST00000361642ENST00000424869ENST00000437844ENST00000446923ENST00000488625ENST00000542815ENST00000542879ENST00000557827ENST00000558440ENST00000558655ENST00000559858ENST00000560721ENSG00000165322ENST00000311380ENST00000344936ENST00000375245ENST00000375250ENST00000396144ENST00000492028ENST00000493008ENST00000497085ENSG00000223834ENST00000420945ENSG00000230397ENST00000447199ENSG00000231148ENST00000450921ENSG00000237797ENST00000433770CIL_0000R1_0002ENSMUSG00000024238ENSMUST00000025081ENSMUST00000177030ENSMUSG00000041225ENSMUST00000062584ENSMUST00000077128ENSMUST00000182038ENSMUST00000182066ENSMUST00000182101ENSMUST00000182213ENSMUST00000182383ENSMUST00000182559ENSMUST00000182614ENSMUSG00000063087ENSMUST00000074702ENSMUST00000161096ENSMUST00000161921ENSMUST00000178464ENSMUSG00000090078ENSMUST00000162143
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000148516 ENST00000320985 11.603±0.00 4.575±0.00 N/A 7.286±0.00 5.094±2.35 10.748±9.40 4.013±2.34 0.980±0.00 4.864±3.79 12.393±0.00 15.006±0.00 2.213±1.65 2.456±0.92 5.510±2.61
ENST00000361642 2.843±0.00 N/A N/A N/A N/A N/A N/A 0.799±0.00 N/A N/A N/A 1.314±0.11 1.191±0.48 N/A
ENST00000424869 N/A N/A N/A N/A 9.045±0.00 10.238±0.00 7.016±0.00 N/A 21.203±0.00 10.281±0.00 N/A N/A N/A N/A
ENST00000437844 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.902±0.00 N/A N/A
ENST00000446923 N/A N/A N/A 2.153±0.28 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488625 N/A N/A N/A N/A 1.385±0.00 N/A 1.365±0.00 0.654±0.00 N/A 2.733±0.00 0.365±0.00 0.372±0.00 N/A 1.734±0.00
ENST00000493835 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000542815 N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.387±0.00 N/A N/A N/A N/A
ENST00000542879 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.957±0.00 N/A N/A 2.577±0.00
ENST00000557827 N/A N/A N/A N/A N/A N/A N/A 2.760±0.00 N/A N/A N/A N/A N/A N/A
ENST00000558440 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.048±0.00 N/A N/A N/A
ENST00000558655 N/A N/A 1.838±0.00 N/A N/A N/A 3.562±0.00 N/A 8.487±0.00 N/A N/A 2.346±0.00 N/A N/A
ENST00000558832 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558863 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559476 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559496 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559858 N/A N/A N/A 4.275±0.00 7.280±0.00 3.137±0.00 N/A N/A 9.139±0.00 4.586±0.00 2.161±0.00 N/A N/A N/A
ENST00000560196 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560721 N/A N/A 0.580±0.00 2.571±0.00 N/A N/A N/A N/A N/A N/A N/A 1.122±0.00 N/A N/A
ENST00000560909 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561061 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561212 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561304 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000606161 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000606671 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000165322 ENST00000311380 1.867±0.00 1.023±0.00 N/A 2.589±1.28 1.781±0.00 N/A 1.264±0.00 1.186±0.00 1.125±0.00 N/A 0.827±0.08 1.184±0.00 0.679±0.00 1.807±0.00
ENST00000344936 1.878±0.00 0.964±0.00 N/A 2.173±0.00 1.452±0.44 1.529±0.66 1.975±0.77 1.450±0.00 3.889±2.96 3.362±1.79 0.963±0.00 5.132±2.71 0.895±0.23 1.618±0.00
ENST00000375245 N/A N/A N/A 1.454±0.05 N/A 2.530±0.00 0.381±0.00 1.696±0.00 N/A N/A N/A 3.145±0.05 0.699±0.00 0.962±0.00
ENST00000375250 N/A N/A N/A 1.492±0.00 1.122±0.34 3.091±0.00 N/A 2.227±0.00 1.071±0.00 0.716±0.00 N/A 2.889±1.63 1.127±0.44 0.964±0.00
ENST00000396144 N/A N/A 1.203±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000454919 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492028 1.111±0.00 N/A N/A N/A 1.178±0.00 1.041±0.00 N/A 2.332±0.00 N/A 1.589±0.00 0.364±0.00 1.313±0.00 N/A 1.281±0.00
ENST00000493008 N/A N/A N/A N/A 3.273±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497085 N/A N/A N/A N/A N/A N/A N/A N/A 0.835±0.00 N/A N/A 7.228±0.00 N/A 4.202±0.00
ENST00000497103 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000223834 ENST00000420945 N/A 0.189±0.00 N/A 0.066±0.00 0.063±0.00 1.484±0.00 N/A N/A N/A N/A 0.292±0.00 0.093±0.02 0.276±0.00 0.342±0.09
ENSG00000230397 ENST00000447199 N/A N/A N/A N/A N/A 0.652±0.00 N/A N/A 3.544±0.00 N/A N/A 0.082±0.00 N/A N/A
ENSG00000231148 ENST00000450921 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.030±0.00 N/A 0.050±0.00
ENSG00000237797 ENST00000433770 N/A 0.215±0.00 N/A 0.147±0.04 0.208±0.00 N/A 0.161±0.00 N/A 0.075±0.00 N/A N/A 0.594±0.12 0.577±0.00 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024238 ENSMUST00000025081 7.993±2.70 2.705±0.00 7.067±1.98 10.000±6.23 6.535±2.01 1.556±0.37 6.263±0.24 2.118±0.85 2.070±1.14 8.594±0.98 4.888±1.10 6.884±2.72 2.031±0.79 1.886±0.52
ENSMUST00000159390 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000159477 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000160522 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000160910 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161295 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162892 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000175739 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000175925 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177030 N/A 2.502±0.40 N/A 15.363±0.00 2.104±0.00 N/A N/A N/A N/A N/A N/A 4.755±3.57 1.583±0.59 2.131±0.00
ENSMUST00000177070 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000041225 ENSMUST00000062584 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.771±0.00 3.180±0.76 N/A
ENSMUST00000077128 0.934±0.11 0.479±0.10 N/A 3.882±1.03 0.741±0.22 1.707±0.14 0.606±0.13 1.060±0.23 0.496±0.16 0.829±0.00 0.774±0.21 2.234±2.38 2.101±0.38 N/A
ENSMUST00000181989 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000182038 N/A N/A N/A N/A N/A 2.329±0.40 1.749±0.00 1.728±0.00 N/A N/A N/A 1.664±0.41 N/A 7.036±3.79
ENSMUST00000182066 0.497±0.00 N/A 3.007±0.00 3.455±1.26 0.592±0.00 1.299±0.10 N/A 0.597±0.00 N/A N/A 0.569±0.03 5.921±0.79 2.091±0.19 N/A
ENSMUST00000182101 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 14.211±0.00 N/A
ENSMUST00000182178 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000182213 1.725±0.09 1.131±0.00 4.973±1.20 3.248±0.00 2.331±1.01 2.785±0.73 1.608±0.56 1.718±0.54 1.572±0.33 2.494±0.69 1.353±0.60 1.766±0.80 1.910±0.71 N/A
ENSMUST00000182322 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000182343 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000182383 N/A N/A N/A 3.786±0.00 N/A N/A N/A N/A 1.079±0.00 N/A N/A N/A N/A 7.092±0.00
ENSMUST00000182559 0.813±0.08 1.318±0.41 2.580±0.00 5.591±0.00 0.836±0.36 0.998±0.00 0.555±0.03 1.243±0.34 0.746±0.25 1.271±0.20 1.532±0.37 1.509±0.97 3.693±1.14 2.905±0.65
ENSMUST00000182572 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000182614 N/A 2.123±0.40 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000182921 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000063087 ENSMUST00000074702 N/A N/A N/A N/A N/A N/A N/A N/A 0.894±0.00 N/A N/A N/A N/A 2.457±0.65
ENSMUST00000160925 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161096 N/A N/A N/A N/A N/A N/A N/A N/A 0.352±0.00 N/A N/A 1.187±0.00 N/A N/A
ENSMUST00000161383 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161921 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.685±0.26
ENSMUST00000177190 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000178464 N/A 5.877±0.74 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000090078 ENSMUST00000162143 N/A N/A 0.057±0.02 0.153±0.00 N/A N/A 0.336±0.00 N/A 0.074±0.02 N/A N/A 0.185±0.03 0.148±0.06 0.166±0.00

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