C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SLIT-ROBO Rho GTPase activating protein 2C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000367123 SRGAP2C-001 ENSG00000171943 9606 + 1:121184810-121392822 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000367123
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000367123 1.019±0.00 0.617±0.00 0.231±0.00 1.397±0.00 0.745±0.21 0.448±0.14 0.222±0.08 0.752±0.48 0.371±0.18 1.046±0.18 0.086±0.02 0.552±0.38 0.889±0.15 0.475±0.11

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0021816 IDA extension of a leading process involved in cell motility in cerebral cortex radial glia guided migration
GO:0030001 IEA metal ion transport
GO:0042803 IPI protein homodimerization activity
GO:0046872 IEA metal ion binding
GO:0046982 IPI protein heterodimerization activity
GO:0051490 IDA negative regulation of filopodium assembly
GO:0061000 IDA negative regulation of dendritic spine development
GO:2001224 IDA positive regulation of neuron migration

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000186543 Srgap2-004 protein_coding Mus_musculus 0 2265
ENSMUST00000097588 Srgap2-001 protein_coding Mus_musculus 0 2265
ENSMUST00000185596 Srgap2-005 protein_coding Mus_musculus 0 1262
ENSMUST00000189893 Srgap2-002 retained_intron Mus_musculus 0 1101
ENSDART00000045391 srgap2a-201 protein_coding Danio_rerio 0 909
ENSDART00000103865 srgap2a-001 protein_coding Danio_rerio 0 909
ENSMUST00000185445 Srgap2-009 protein_coding Mus_musculus 0 490
ENSMUST00000060215 Srgap3-003 retained_intron Mus_musculus 0 329
ENSMUST00000113169 Srgap3-004 protein_coding Mus_musculus 0 329
ENSMUST00000088373 Srgap3-001 protein_coding Mus_musculus 0 329
ENSMUST00000188770 Srgap2-006 protein_coding Mus_musculus 0 267
ENSMUST00000187273 Srgap2-010 protein_coding Mus_musculus 0 241
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.0001 55

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