C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ganglioside induced differentiation associated protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000369443 GDAP2-001 ENSG00000196505 9606 - 1:117863485-117929630 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000369443
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000369443 1.374±0.00 0.209±0.00 3.625±0.00 0.820±0.74 1.556±0.70 3.589±0.00 0.583±0.00 1.589±1.13 6.716±0.00 4.644±0.00 0.581±0.34 1.362±1.29 0.488±0.12 0.871±0.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008A1 CIL_0008A1_0001 VISTA 1:117312950-117913675
CIL_0008HM CIL_0008HM_0001 VISTA 1:117358424-117964281
CIL_00012Q CIL_00012Q_0002 CGP 1:117605934-117929630
CIL_00012R CIL_00012R_0002 CGP 1:117863485-117966542

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005765 IDA lysosomal membrane
GO:0032526 IEA response to retinoic acid

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029459 Gdap2-001 protein_coding Mus_musculus 0 2200
ENSMUST00000106997 Gdap2-002 protein_coding Mus_musculus 0 1799

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