C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 20537
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000154586 Gm20537-002 ENSMUSG00000092541 10090 - 9:88420629-88456501 nonsense_mediated_decay

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007K0 CIL_0007K0_0002 UCNEbase 9:87376892-88455782
CIL_0008Z9 CIL_0008Z9_0002 VISTA 9:87836921-88439766
CIL_0007TL CIL_0007TL_0002 VISTA 9:87895357-88499255
CIL_0006BN CIL_0006BN_0003 CGP 9:88327197-88438958
CIL_0005XI CIL_0005XI_0002 CGP 9:88376750-88456616
CIL_0005XJ CIL_0005XJ_0002 CGP 9:88407432-88482574

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000314673 SNX14-002 protein_coding Homo_sapiens 0 281
ENST00000346348 SNX14-001 protein_coding Homo_sapiens 0 281
ENST00000355238 SYNCRIP-002 protein_coding Homo_sapiens 0 392
ENST00000369622 SYNCRIP-001 protein_coding Homo_sapiens 0 243
ENST00000369627 SNX14-008 protein_coding Homo_sapiens 0 281
ENST00000369635 SNX14-005 nonsense_mediated_decay Homo_sapiens 0 281
ENST00000434910 RP4-775C13.1-001 processed_pseudogene Homo_sapiens 0 292
ENST00000503906 RP11-321N4.5-001 nonsense_mediated_decay Homo_sapiens 0 678
ENST00000505648 SNX14-009 protein_coding Homo_sapiens 0 281
ENST00000508980 SNX14-006 processed_transcript Homo_sapiens 0 281
ENST00000509338 SNX14-013 protein_coding Homo_sapiens 0 281
ENST00000513865 SNX14-007 protein_coding Homo_sapiens 0 281
ENST00000513869 SNX14-014 nonsense_mediated_decay Homo_sapiens 0 281
ENST00000514419 SNX14-015 protein_coding Homo_sapiens 0 267
ENST00000515216 SNX14-011 protein_coding Homo_sapiens 3e-22 111
ENST00000616122 SYNCRIP-201 protein_coding Homo_sapiens 0 392

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