C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neurexin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000377559 NRXN2-002 ENSG00000110076 9606 - 11:64606174-64723188 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastLungOvaryENST00000377559
Transcript ID Breast Lung Ovary
ENST00000377559 0.022±0.00 0.015±0.00 0.023±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005J6 CIL_0005J6_0002 CGP 11:64606174-64745456

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005246 ISS calcium channel regulator activity
GO:0005515 IEA protein binding
GO:0007158 TAS neuron cell-cell adhesion
GO:0007268 ISS synaptic transmission
GO:0007269 ISS neurotransmitter secretion
GO:0007416 ISS synapse assembly
GO:0016021 IEA integral component of membrane
GO:0030534 IMP adult behavior
GO:0035176 IMP social behavior
GO:0042297 IMP vocal learning
GO:0046872 IEA metal ion binding
GO:0050839 ISS cell adhesion molecule binding
GO:0071625 IMP vocalization behavior
GO:0097104 ISS postsynaptic membrane assembly
GO:0097109 ISS neuroligin family protein binding
GO:0097116 ISS gephyrin clustering
GO:0097118 ISS neuroligin clustering
GO:0097119 ISS postsynaptic density protein 95 clustering

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000113461 Nrxn2-008 protein_coding Mus_musculus 0 7354
ENSMUST00000113462 Nrxn2-001 protein_coding Mus_musculus 0 3832
ENSMUST00000137166 Nrxn2-013 protein_coding Mus_musculus 0 3736
ENSMUST00000077182 Nrxn2-201 protein_coding Mus_musculus 0 3677
ENSMUST00000113458 Nrxn2-004 protein_coding Mus_musculus 0 2222
ENSMUST00000150792 Nrxn2-005 retained_intron Mus_musculus 0 2089
ENSMUST00000128272 Nrxn2-002 retained_intron Mus_musculus 0 1363
ENSMUST00000140435 Nrxn2-006 retained_intron Mus_musculus 0 1284
ENSMUST00000113459 Nrxn2-003 protein_coding Mus_musculus 0 1068
ENSMUST00000124815 Nrxn2-011 processed_transcript Mus_musculus 0 983
ENSMUST00000167103 Nrxn3-003 nonsense_mediated_decay Mus_musculus 0 852
ENSMUST00000157014 Nrxn2-007 processed_transcript Mus_musculus 0 845
ENSMUST00000163134 Nrxn3-001 protein_coding Mus_musculus 0 761
ENSMUST00000190626 Nrxn3-012 nonsense_mediated_decay Mus_musculus 0 699
ENSMUST00000155158 Nrxn2-014 protein_coding Mus_musculus 0 682
ENSMUST00000057634 Nrxn3-002 protein_coding Mus_musculus 0 664
ENSDART00000131050 NRXN2 (2 of 2)-201 protein_coding Danio_rerio 0 634
ENSMUST00000137821 Nrxn2-012 protein_coding Mus_musculus 0 592
ENSMUST00000154580 Nrxn2-010 processed_transcript Mus_musculus 0 582
ENSMUST00000167887 Nrxn3-201 protein_coding Mus_musculus 0 531
ENSDART00000113409 protein_coding Danio_rerio 0 241
ENSDART00000111239 nrxn1a-202 protein_coding Danio_rerio 1e-33 150
ENSDART00000088178 nrxn1a-201 protein_coding Danio_rerio 1e-33 150
ENSDART00000056256 nrxn1a-003 protein_coding Danio_rerio 1e-33 150
ENSDART00000088159 nrxn1a-002 protein_coding Danio_rerio 1e-33 150
ENSDART00000093094 nrxn1a-001 protein_coding Danio_rerio 1e-33 150

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