C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Snf2-related CREBBP activator protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000380361 SRCAP-002 ENSG00000080603 9606 + 16:30704067-30745169 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonKidneyLiverLungOvaryPlacentaTestisENST00000380361
Transcript ID Adrenal Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000380361 3.745±0.00 1.753±0.00 3.016±0.00 3.756±0.00 1.145±0.00 2.397±1.19 7.905±2.16 6.103±0.00 5.810±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003VJ CIL_0003VJ_0002 CGP 16:30658431-30745194
CIL_0001KJ CIL_0001KJ_0001 CGP 16:30698209-30761176

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003713 TAS transcription coactivator activity
GO:0004386 IEA helicase activity
GO:0004402 TAS histone acetyltransferase activity
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005794 IDA Golgi apparatus
GO:0006351 IEA transcription, DNA-templated
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0016032 IEA viral process
GO:0016573 TAS histone acetylation
GO:0043234 IDA protein complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000189629 Srcap-009 nonsense_mediated_decay Mus_musculus 0 6117
ENSMUST00000186954 Srcap-014 protein_coding Mus_musculus 0 6117
ENSMUST00000190390 Srcap-013 protein_coding Mus_musculus 0 4172
ENSMUST00000187040 Srcap-001 protein_coding Mus_musculus 0 3932
ENSMUST00000186672 Srcap-005 protein_coding Mus_musculus 0 1945
ENSMUST00000084563 Srcap-202 protein_coding Mus_musculus 0 1609
ENSMUST00000187164 Srcap-006 retained_intron Mus_musculus 0 1594
ENSMUST00000066582 Srcap-201 protein_coding Mus_musculus 0 1580
ENSMUST00000188124 Srcap-003 protein_coding Mus_musculus 0 1495
ENSMUST00000185401 Srcap-002 retained_intron Mus_musculus 0 1284
ENSMUST00000098025 Srcap-203 protein_coding Mus_musculus 0 765
ENSMUST00000189136 Srcap-004 protein_coding Mus_musculus 0 732
ENSMUST00000186759 Srcap-011 retained_intron Mus_musculus 0 329
ENSMUST00000189812 Srcap-007 retained_intron Mus_musculus 0 196

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