C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: forkhead box C1b
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000077753 foxc1b-001 ENSDARG00000055398 7955 + 20:26731984-26733938 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000077753
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000077753 1.051±0.80 14.509±0.00 0.337±0.00 0.035±0.00 1.416±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005SP CIL_0005SP_0001 CGP 20:26731984-26852157

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IBA negative regulation of transcription from RNA polymerase II promoter
GO:0001503 IBA ossification
GO:0001568 IGI blood vessel development
GO:0001656 IBA metanephros development
GO:0001657 IBA ureteric bud development
GO:0001756 IBA somitogenesis
GO:0001944 IGI vasculature development
GO:0001946 IBA lymphangiogenesis
GO:0001974 IBA blood vessel remodeling
GO:0003677 IEA DNA binding
GO:0003690 IBA double-stranded DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003705 IBA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0005667 IBA transcription factor complex
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0006366 IBA transcription from RNA polymerase II promoter
GO:0007219 IBA Notch signaling pathway
GO:0008134 IBA transcription factor binding
GO:0008301 IBA DNA binding, bending
GO:0030199 IBA collagen fibril organization
GO:0031490 IBA chromatin DNA binding
GO:0035050 IBA embryonic heart tube development
GO:0043010 IGI camera-type eye development
GO:0043066 IBA negative regulation of apoptotic process
GO:0043114 IGI regulation of vascular permeability
GO:0043565 IEA sequence-specific DNA binding
GO:0045944 IBA positive regulation of transcription from RNA polymerase II promoter
GO:0046620 IBA regulation of organ growth
GO:0048010 IBA vascular endothelial growth factor receptor signaling pathway
GO:0048343 IBA paraxial mesodermal cell fate commitment
GO:0048844 IBA artery morphogenesis
GO:0050880 IBA regulation of blood vessel size
GO:0051090 IBA regulation of sequence-specific DNA binding transcription factor activity
GO:0055010 IBA ventricular cardiac muscle tissue morphogenesis
GO:0060038 IBA cardiac muscle cell proliferation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000058600 Foxd4-201 protein_coding Mus_musculus 0.000003 58
ENSMUST00000087285 Foxd3-001 protein_coding Mus_musculus 0.00000000000005 84
ENSMUST00000105098 Foxd1-001 protein_coding Mus_musculus 0.00000007 64
ENST00000306507 FOXD4L1-001 protein_coding Homo_sapiens 0.0002 53
ENST00000320354 FOXC2-001 protein_coding Homo_sapiens 0 303
ENST00000334793 FOXD2-001 protein_coding Homo_sapiens 0.0000001 64
ENST00000342833 FOXD4L3-001 protein_coding Homo_sapiens 0.0001 53
ENST00000371116 FOXD3-001 protein_coding Homo_sapiens 0.00000000000001 86
ENST00000377413 FOXD4L4-001 protein_coding Homo_sapiens 0.0001 53
ENST00000377420 FOXD4L5-001 protein_coding Homo_sapiens 0.0002 53
ENST00000380874 FOXC1-001 protein_coding Homo_sapiens 0 405
ENST00000382500 FOXD4-001 protein_coding Homo_sapiens 0.0001 53
ENST00000622588 FOXD4L6-001 protein_coding Homo_sapiens 0.0001 53

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