C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pre-mRNA processing factor 31
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000391755 PRPF31-003 ENSG00000105618 9606 + 19:54118271-54131709 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000391755
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000391755 19.904±0.00 37.081±0.00 21.225±0.00 13.804±10.44 20.998±0.00 7.551±6.61 13.068±11.00 15.972±0.00 9.786±8.30 10.283±0.00 26.247±10.90 24.664±3.01 24.034±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005NN CIL_0005NN_0001 CGP 19:54102728-54115675
CIL_0005O3 CIL_0005O3_0001 CGP 19:54107013-54131719
CIL_0005OD CIL_0005OD_0001 CGP 19:54115410-54155681

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000244 IEA spliceosomal tri-snRNP complex assembly
GO:0046540 IEA U4/U6 x U5 tri-snRNP complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000179769 Prpf31-201 protein_coding Mus_musculus 0 1890
ENSMUST00000108636 Prpf31-004 protein_coding Mus_musculus 0 1890
ENSMUST00000008517 Prpf31-001 protein_coding Mus_musculus 0 1807
ENSMUST00000125782 Prpf31-003 retained_intron Mus_musculus 0 907
ENSMUST00000143231 Prpf31-002 retained_intron Mus_musculus 0 318

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