C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SMT3 suppressor of mif two 3 homolog 1 (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000091374 Sumo1-001 ENSMUSG00000026021 10090 - 1:59639434-59670834 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000091374
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000091374 14.211±1.55 8.629±2.59 60.045±1.53 45.798±15.68 11.836±1.43 9.608±1.79 13.044±1.10 17.320±3.14 26.031±19.59 16.786±1.56 34.161±2.49 18.431±20.81 43.269±10.27 29.413±4.56

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009CR CIL_0009CR_0002 VISTA 1:59040862-59642046
CIL_00020N CIL_00020N_0002 CGP 1:59482424-59636417
CIL_00020U CIL_00020U_0002 CGP 1:59516264-59670834
CIL_00020T CIL_00020T_0002 CGP 1:59586558-59719044

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001650 IEA fibrillar center
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005730 IEA nucleolus
GO:0005737 IEA cytoplasm
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0006950 IEA response to stress
GO:0008134 IPI transcription factor binding
GO:0016604 IDA nuclear body
GO:0016605 ISS PML body
GO:0016925 ISS protein sumoylation
GO:0019789 IDA SUMO ligase activity
GO:0030425 IEA dendrite
GO:0030578 IMP PML body organization
GO:0031334 IEA positive regulation of protein complex assembly
GO:0031625 ISS ubiquitin protein ligase binding
GO:0031965 IEA nuclear membrane
GO:0032436 IEA positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0043392 IEA negative regulation of DNA binding
GO:0043433 IEA negative regulation of sequence-specific DNA binding transcription factor activity
GO:0044822 IEA poly(A) RNA binding
GO:0045202 IEA synapse
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0060021 IMP palate development
GO:0090204 IMP protein localization to nuclear pore

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000392244 SUMO1-007 protein_coding Homo_sapiens 0 865
ENST00000392245 SUMO1-201 protein_coding Homo_sapiens 0 638
ENST00000392246 SUMO1-001 protein_coding Homo_sapiens 0 1352
ENST00000403074 RP11-174C7.1-001 processed_pseudogene Homo_sapiens 0 193
ENST00000409181 SUMO1-005 protein_coding Homo_sapiens 0 821
ENST00000409205 SUMO1-010 protein_coding Homo_sapiens 0 676
ENST00000409368 SUMO1-002 protein_coding Homo_sapiens 0 667
ENST00000409498 SUMO1-003 protein_coding Homo_sapiens 0 691
ENST00000409627 SUMO1-006 nonsense_mediated_decay Homo_sapiens 0 617
ENST00000409712 SUMO1-004 protein_coding Homo_sapiens 0 499
ENST00000429430 SUMO1P4-001 processed_pseudogene Homo_sapiens 0 448
ENST00000439961 SUMO1P3-001 processed_pseudogene Homo_sapiens 0 479
ENST00000452524 SUMO1P2-001 processed_pseudogene Homo_sapiens 0 379
ENST00000469034 SUMO1-008 processed_transcript Homo_sapiens 0 484
ENST00000497904 SUMO1P1-001 processed_pseudogene Homo_sapiens 0 388
ENST00000513479 CTD-2347I17.1-001 processed_pseudogene Homo_sapiens 0 342

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