C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000394536 PCDH1-001 ENSG00000156453 9606 - 5:141862652-141878410 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000394536
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000394536 9.719±0.00 8.307±0.00 3.792±2.74 5.172±4.14 5.162±0.00 21.138±0.00 12.686±0.00 12.876±10.13 0.785±0.50 1.474±0.48 16.057±8.40 1.257±0.99

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006QH CIL_0006QH_0001 CGP 5:141653401-141879246
CIL_0006QI CIL_0006QI_0001 CGP 5:141853111-141942047

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA:TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0005911 TAS cell-cell junction
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007267 TAS cell-cell signaling
GO:0007399 TAS nervous system development
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000159405 Pcdh1-005 protein_coding Mus_musculus 0 4098
ENSMUST00000057185 Pcdh1-001 protein_coding Mus_musculus 0 3886
ENSMUST00000161701 Pcdh1-002 protein_coding Mus_musculus 0 3247
ENSMUST00000160721 Pcdh1-004 protein_coding Mus_musculus 0 1232

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