C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CAP-GLY domain containing linker protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000395060 CLIP2-002 ENSG00000106665 9606 + 7:74317547-74403848 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000395060
Transcript ID Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000395060 0.309±0.00 7.687±3.54 0.518±0.00 2.125±0.00 0.412±0.00 2.462±0.00 0.473±0.00 0.524±0.00 5.066±3.80 6.814±0.00 1.859±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00007F CIL_00007F_0002 CGP 7:74289475-74602604

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005875 TAS microtubule associated complex
GO:0016020 IEA membrane
GO:0016192 IEA vesicle-mediated transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000100647 Clip2-202 protein_coding Mus_musculus 0 3354
ENSMUST00000036999 Clip2-201 protein_coding Mus_musculus 0 1659
ENSMUST00000063905 Clip1-003 protein_coding Mus_musculus 0 361
ENSMUST00000111561 Clip1-005 protein_coding Mus_musculus 0 361
ENSMUST00000031382 Clip1-008 protein_coding Mus_musculus 0 318
ENSMUST00000111566 Clip1-001 protein_coding Mus_musculus 0 318
ENSMUST00000111564 Clip1-002 protein_coding Mus_musculus 0 318
ENSMUST00000144121 Clip1-006 nonsense_mediated_decay Mus_musculus 0 307
ENSMUST00000137363 Clip1-007 protein_coding Mus_musculus 0 289

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