C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CAP-GLY domain containing linker protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000144121 Clip1-006 ENSMUSG00000049550 10090 - 5:123617657-123655908 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalTestisENSMUST00000144121
Transcript ID Adrenal Testis
ENSMUST00000144121 2.873±0.89 35.210±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002ZE CIL_0002ZE_0002 CGP 5:123528764-123684618
CIL_0002ZD CIL_0002ZD_0002 CGP 5:123577795-123721044

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000223398 CLIP2-201 protein_coding Homo_sapiens 0 307
ENST00000302528 CLIP1-001 protein_coding Homo_sapiens 0 1701
ENST00000358808 CLIP1-201 protein_coding Homo_sapiens 0 1701
ENST00000361545 CLIP2-001 protein_coding Homo_sapiens 0 309
ENST00000361654 CLIP1-007 protein_coding Homo_sapiens 0 970
ENST00000395060 CLIP2-002 protein_coding Homo_sapiens 0 307
ENST00000514271 CLIP1-011 retained_intron Homo_sapiens 0 1116
ENST00000537004 CLIP1-006 protein_coding Homo_sapiens 0 483
ENST00000537178 CLIP1-002 protein_coding Homo_sapiens 0 1515
ENST00000540304 CLIP1-005 protein_coding Homo_sapiens 0 872
ENST00000540338 CLIP1-003 protein_coding Homo_sapiens 0 2721
ENST00000541108 CLIP1-004 nonsense_mediated_decay Homo_sapiens 0 483
ENST00000541410 CLIP1-012 retained_intron Homo_sapiens 0 610
ENST00000545889 CLIP1-008 protein_coding Homo_sapiens 0 870
ENST00000620786 CLIP1-202 protein_coding Homo_sapiens 0 2721

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