C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CAP-GLY domain containing linker protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000111566 Clip1-001 ENSMUSG00000049550 10090 - 5:123577795-123684618 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaENSMUST00000111566
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000111566 1.872±0.00 1.016±0.23 3.571±0.09 3.372±0.14 1.160±0.22 1.252±0.60 1.145±0.38 0.766±0.24 2.606±0.71 9.753±0.00 1.669±0.58 2.879±0.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002ZE CIL_0002ZE_0002 CGP 5:123528764-123684618
CIL_0002ZD CIL_0002ZD_0002 CGP 5:123577795-123721044

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001578 ISS microtubule bundle formation
GO:0003676 IEA nucleic acid binding
GO:0005515 IPI protein binding
GO:0005813 IEA centrosome
GO:0005874 IDA microtubule
GO:0005881 IDA cytoplasmic microtubule
GO:0008017 IDA microtubule binding
GO:0008270 ISS zinc ion binding
GO:0015630 ISS microtubule cytoskeleton
GO:0015631 ISS tubulin binding
GO:0016020 IEA membrane
GO:0031116 ISS positive regulation of microtubule polymerization
GO:0031410 IEA cytoplasmic vesicle
GO:0035371 ISS microtubule plus-end
GO:0042995 IEA cell projection
GO:0044354 ISS macropinosome
GO:0044861 IMP protein transport into plasma membrane raft
GO:0051010 IDA microtubule plus-end binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000223398 CLIP2-201 protein_coding Homo_sapiens 0 318
ENST00000302528 CLIP1-001 protein_coding Homo_sapiens 0 3517
ENST00000358808 CLIP1-201 protein_coding Homo_sapiens 0 3517
ENST00000361545 CLIP2-001 protein_coding Homo_sapiens 0 318
ENST00000361654 CLIP1-007 protein_coding Homo_sapiens 0 2608
ENST00000395060 CLIP2-002 protein_coding Homo_sapiens 0 318
ENST00000501271 CLIP1-014 retained_intron Homo_sapiens 0 580
ENST00000514271 CLIP1-011 retained_intron Homo_sapiens 0 1118
ENST00000536634 CLIP1-013 processed_transcript Homo_sapiens 0 826
ENST00000537004 CLIP1-006 protein_coding Homo_sapiens 0 1144
ENST00000537178 CLIP1-002 protein_coding Homo_sapiens 0 5297
ENST00000538120 CLIP1-010 retained_intron Homo_sapiens 0 833
ENST00000539080 CLIP1-016 protein_coding Homo_sapiens 1e-25 121
ENST00000540304 CLIP1-005 protein_coding Homo_sapiens 0 1144
ENST00000540338 CLIP1-003 protein_coding Homo_sapiens 0 3140
ENST00000540539 CLIP1-015 protein_coding Homo_sapiens 0 531
ENST00000541108 CLIP1-004 nonsense_mediated_decay Homo_sapiens 0 1144
ENST00000541410 CLIP1-012 retained_intron Homo_sapiens 0 848
ENST00000543205 CLIP1-009 retained_intron Homo_sapiens 0 377
ENST00000545889 CLIP1-008 protein_coding Homo_sapiens 0 2486
ENST00000620786 CLIP1-202 protein_coding Homo_sapiens 0 3517

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