C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CAP-GLY domain containing linker protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000031382 Clip1-008 ENSMUSG00000049550 10090 - 5:123579244-123656018 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainHeartLungMuscleOvaryPlacentaENSMUST00000031382
Transcript ID Adrenal Brain Heart Lung Muscle Ovary Placenta
ENSMUST00000031382 2.250±0.52 13.060±0.00 4.724±0.13 2.904±0.00 11.747±0.04 21.223±15.38 18.640±13.58

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002ZE CIL_0002ZE_0002 CGP 5:123528764-123684618
CIL_0002ZD CIL_0002ZD_0002 CGP 5:123577795-123721044

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0005515 IPI protein binding
GO:0005881 IDA cytoplasmic microtubule
GO:0008017 IDA microtubule binding
GO:0008270 IEA zinc ion binding
GO:0035371 IDA microtubule plus-end
GO:0044861 IMP protein transport into plasma membrane raft
GO:0051010 IDA microtubule plus-end binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000223398 CLIP2-201 protein_coding Homo_sapiens 0 318
ENST00000302528 CLIP1-001 protein_coding Homo_sapiens 0 3326
ENST00000358808 CLIP1-201 protein_coding Homo_sapiens 0 3326
ENST00000361545 CLIP2-001 protein_coding Homo_sapiens 0 320
ENST00000361654 CLIP1-007 protein_coding Homo_sapiens 0 2231
ENST00000395060 CLIP2-002 protein_coding Homo_sapiens 0 318
ENST00000501271 CLIP1-014 retained_intron Homo_sapiens 0 464
ENST00000514271 CLIP1-011 retained_intron Homo_sapiens 0 1116
ENST00000536634 CLIP1-013 processed_transcript Homo_sapiens 0 726
ENST00000537004 CLIP1-006 protein_coding Homo_sapiens 0 1103
ENST00000537178 CLIP1-002 protein_coding Homo_sapiens 0 3140
ENST00000538120 CLIP1-010 retained_intron Homo_sapiens 0 833
ENST00000540304 CLIP1-005 protein_coding Homo_sapiens 0 1103
ENST00000540338 CLIP1-003 protein_coding Homo_sapiens 0 4977
ENST00000540539 CLIP1-015 protein_coding Homo_sapiens 0 459
ENST00000541108 CLIP1-004 nonsense_mediated_decay Homo_sapiens 0 1103
ENST00000541410 CLIP1-012 retained_intron Homo_sapiens 0 610
ENST00000543205 CLIP1-009 retained_intron Homo_sapiens 0 377
ENST00000545889 CLIP1-008 protein_coding Homo_sapiens 0 2109
ENST00000620786 CLIP1-202 protein_coding Homo_sapiens 0 4977

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