C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: peripheral myelin protein 22
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000395938 PMP22-001 ENSG00000109099 9606 - 17:15229778-15262589 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000395938
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000395938 110.855±0.00 52.693±0.00 49.102±30.91 30.812±16.32 104.830±0.00 20.199±16.62 13.847±12.76 9.155±4.34 49.516±44.00 67.701±31.62 29.517±23.61 72.047±24.81 26.424±20.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005Y3 CIL_0005Y3_0002 CGP 17:14301083-15265326
CIL_0008QF CIL_0008QF_0001 VISTA 17:15144744-15748248
CIL_0005Y9 CIL_0005Y9_0002 CGP 17:15229777-15341641

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005886 IEA plasma membrane
GO:0007268 TAS synaptic transmission
GO:0007422 TAS peripheral nervous system development
GO:0008219 IEA cell death
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000018361 Pmp22-001 protein_coding Mus_musculus 0 1417
ENSMUST00000108702 Pmp22-002 protein_coding Mus_musculus 0 1380
ENSMUST00000108700 Pmp22-005 protein_coding Mus_musculus 0 610
ENSMUST00000108701 Pmp22-003 protein_coding Mus_musculus 0 569
ENSDART00000146142 pmp22b-002 protein_coding Danio_rerio 4e-29 134
ENSDART00000085201 pmp22b-001 protein_coding Danio_rerio 4e-29 134

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